K07519 - RIKEN Arabidopsis Genome Encyclopedia

K07519

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07519

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07519

Determination of introduced cDNA(s)

  • J023012I24 - Rice Full-length cDNAs - Original: J023012I24

    full reading [+] show sequence

    Nucleotide sequence: J023012I24 - full reading
    TGGGATCTCG CCTCGATCGC GGCGGTGGCG GTGGGGAGGG GAGCGCACCG 
    CCTGCCCAGC CATGAGATGG TATGCTTCGC TAGCCTGAGG AGGGCTCTGC
    CTCTGCTGCT GCGCGCCACC ACCACCACCA CCCCCCGCTT CCTTCTCCCC
    AGGGCCCTCT CCGGCGGCGT TGGCGGCGGG GCGGCGGTGG ATGCGCGCGC
    GCTTCTCCGT GGGCACAGCG GGTGGCGCGG GCTCCGGGTG GCCGCCAGGA
    TGATGCTCGA CTCCTCCGAC TCCGCCGCCG CTGCGGGGCA GATGCAGCCG
    CAGCAGCGTG CGGCGGGGGC CGTCGCCTGC AGCGCGCAGG ACGGTGGTGC
    CGCAGGGTAC GCCAGCGGCG GGTGGGCGAG AGAAGATGGT AAACTGAAAT
    GTGGATATTC AAGTTTTAGA GGGAAGAGAG CCACCATGGA GGATTTCTAT
    GATGTAAAGT TAACTGAAAT CGATGGACAG GCTGTTAGCC TATTTGGTGT
    ATTTGATGGT CATGGAGGAC CACGTGCTGC TGAGTATTTG AAGGAAAATT
    TGTTCGAAAA TCTTCTGAAA CACCCTGAGT TCCTGACAGA TACAAAGCTT
    GCCATAAGTG AAACATATCA GAAAACAGAT ACAGATTTCT TAGAATCAGA
    ATCCAATGCC TTCAGGGATG ATGGTTCAAC AGCTTCCACT GCAGTTTTGG
    TGGGTGGCCA TCTATATGTA GCAAATGTTG GTGATTCCCG TGCTGTTGTT
    TCAAAAGCTG GTAAAGCTAT GGCACTGTCA GAAGATCACA AACCTAACAG
    GAGTGATGAG CGGAAGAGAA TTGAAAATGC AGGAGGAGTT GTCATTTAGG
    CTGGTACTTG GAGGGTAGGA GGTGTACTGG CAATGTCGCG TGCATTTGGC
    AATCGTCTAC TGAAGCCATT TGTGGTGGCA GAGCCTGAAA TTCAGGAAGA
    ACTTGTCAAT GAAGACTTGG AATGCCTCGT TCTTGCTAGC GATGGACTTT
    GGGATGTCGT GGAAAATGAG GAAGCTGTTT CCCTTGCGAA AACAGAAGAC
    CTGCCTGAGT CGGTGGCTAG GAAACTCACG GAAATAGCCT ATTCTCGAGG
    CAGCGCTGAC AACATTACAT GCATCGTGGT GCAATTTCAC CATGATAAAA
    CTGAATAATA AGATGGGACT AGAGCTGATG AAAGGTTGAA GGTTTTTCTA
    CTTCAAGCTA CTTTCCAGCA GTCCAACCAC AGAGGGGGTT CCCCAGGAGA
    TGTTGCTCCT GTAGCATTTG CTAAGGATTG TTTCGTTGAT TCTTTTCCTT
    GTGTAGGAAT CATTTTTTGT TTTCAGAGGT GTTACGAACA GAAAATTTTA
    TTTCGAGTGT AACACACAGT TTTAATTGGA TGGATACTAA TAAATCAATT
    GCTTGTTTAC CTAATTACCT GCCATTACGG GCATGGCATA TAATTCTCGA
    TGATATATAG TTCTTTTTTG GC

    Gene models with high sequence identity

    1. AT5G53140.1 [+] show detail - Protein phosphatase 2C family protein
      E-value: 1e-113; Score: 407.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    HMMPfam Protein phosphatase 2C, N-terminal 2.7e-33
    HMMPfam Protein phosphatase 2C, N-terminal 1.3e-24
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 1.1e-72
    HMMPanther Protein phosphatase 2C 1.1e-72
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 2.8e-47
    HMMPanther Protein phosphatase 2C 2.8e-47
    Gene3D Protein phosphatase 2C-related 2e-38
    Gene3D Protein phosphatase 2C-related 2.1e-27
    superfamily Protein phosphatase 2C-related 8.5e-40
    superfamily Protein phosphatase 2C-related 1.8e-30
    HMMSmart Protein phosphatase 2C-related 1.8e-22

    See the detailed result >

    AT5G53140.1

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G10740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR