K07535

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07535

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07535

Determination of introduced cDNA(s)

  • J033149M05 - Rice Full-length cDNAs - Original: J033149M05

    full reading [+] show sequence

    Nucleotide sequence: J033149M05 - full reading 
    GGTCTTCGTC GTCGCCATTA TCCCCATTTC TCCCGTATCC TCTCTCTCCT 
    CTCCTCTCTT CTCGAGCGCG GCGGCGGTGG TGGGGAGGAG GAGGGCCAGC 
    GGCAGCAAGC GGCGGCGGCG ACGCGATGAT GATGACGCGG GCGTCGATGG 
    GGGCGATGGA AGGCGCGGCG GTGGACGAGG TGGTGCGGCG CCTCGTGGAG 
    GGCGGGCGCG GGGGGAGGCA GGTGCAGCTG TCGGAGGCGG AGATCCGGCA 
    GCTCTGCGTC GAGGCGAAGC GGGTGCTCCT GTCGCAGCCG AACCTCCTGC 
    GCATCCACGC CCCCGTCAAG ATCTGCGGTG ATATCCATGG GCAATTTGTT 
    GATCTTCTGA GGCTGTTTGA TTTGGGCGGT TATCCTCCAA CTTCCACTTA 
    TCTTTTCCTT GGAGATTATG TGGACAGAGG CAAACAAAGC TTGGAAACCA 
    TATGCTTGCT TCTGGCATAC AAAGTGAAGT ATCCTGATAA GATTTTCCTG 
    TTAAGGGGAA ACCATGAAGA TGCGAAAATT AACAGAGTGT ATGGTTTCTA 
    TGATGAATGT AAGAGGCGAT TCAATGTTCG ACTGTGGAAG ATTTTCTGTG 
    ATTGCTTCAA CTGCTTGCCT ATGGCAGCAC TCATTGACGA TAAGATACTC 
    TGCATGCATG GTGGCCTCTC ACCTGAACTG AATAGCTTGG ATCAAATAAA 
    GGATATCGAG AGGCCCACTG AGATTCCTGA CTATGGTCTT TTGTGTGATT 
    TAGTTTGGTC TGATCCTAGT CCTGACTCAG AAGGGTGGGG AGAGAGTGAC 
    AGAGGTGTTT CCTGCACTTT TGGTGCAGAT AAGCTTGTAG AATTTTTGGA 
    GAAGAATGAT CTTGATCTTA TATGCCGCGC TCATCAGGTT GTTGAGGATG 
    GCTACGAGTT CTTTGCGCAA AGGAGATTAG TGACAATCTT TTCAGCTCCA 
    AACTATTGTG GGGAATTTGA TAATGCGGGT GCTCTGTTGA GCATAGATGA 
    AAGTTTAATG TGTTCTTTTC AAATCTTGAA GCCAAATGAT ACAGGGGCTC 
    CACATTCAAG GAAACCAACT TCAAACAAGA CCCCAAAAAC TGGAAACGCT 
    TAACTTATAT TATATCAAGC TACAAAGCAT AATTGTTGTC AGCCCGAAGG 
    GGGTGATCTC TTTTATGTCT CGGATCCACC AGGGCATGGC ATTAGTCTTC 
    TCCAGCCAAT ATCATTTCCT CCTTGAGTGG CATGCTCTCC GCTGCTCGCT 
    GGATATGTGT TGACTCCACA GGCGGTACTG CATTGTTGTA CAGCAGCAGT 
    CTATCTGACT CAGCAGCTCA TTCATTCTGA TCCTCTTTTT TTTGTTTATC 
    TTGCCGCTGC AATGTTTGGC GGCACAATGT GTTTTGTCGT GGATGCAGTA 
    GTTCCTCTTT TTGTTAGTTT CTTAGTGTGG TTTCTTTGCC TGGTTGCTGT 
    GAGCTGTGTT TGCTTATGTA TCATCTTAAT TAGATCATGA GATATATGCT 
    TGGTGGAATT GTGTAACCCG TTTTCTGTTT C

    Gene models with high sequence identity

    1. AT3G05580.1 [+] show detail - Calcineurin-like metallo-phosphoesterase superfamily protein
      E-value: 2e-136; Score: 483.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
    HMMPfam Metallophosphoesterase 1.2e-47
    superfamily Metallo-dependent phosphatases 6.2e-130
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-94
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-94
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-94
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-94
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-94
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-94
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.9e-94
    Gene3D no description 1e-124
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8e-202
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4.5e-164

    See the detailed result >

    AT3G05580.1

    Model type
    Protein coding
    Short Description
    Calcineurin-like metallo-phosphoesterase superfamily protein
    Computational Description
    Calcineurin-like metallo-phosphoesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT5G27840.1); Has 7114 Blast hits to 6926 proteins in 613 species: Archae - 78; Bacteria - 489; Metazoa - 2408; Fungi - 1415; Plants - 981; Viruses - 10; Other Eukaryotes - 1733 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR