K07536

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07536

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07536

Determination of introduced cDNA(s)

  • J033089P03 - Rice Full-length cDNAs - Original: J033089P03

    full reading [+] show sequence

    Nucleotide sequence: J033089P03 - full reading 
    GAGCTTGCCT CCTCGTCTCG CCGGCGCAGG CGGCGCCTGC ATCTATCCAT 
    CCATCCACCC ACCCACGCCA CCCTCCCGTT CCGATTCGGC GCACGCGGCT 
    GCTAGACACC GCGTTCCTGA CCCGCCGCGA ATGTCGGGGA CGCCTCTTCC 
    CCCACCGGCG CTCCCGCCCC CGCCGGGCAC GGACATGACC GGGATCTGCT 
    TCCGCGACCA GCTCTGGCTC AACACCTACC CGCTCGACCG CAACCTCGTC 
    TTCGACTACT TCGCGCTCTC CCCCTTCTAC GACCTCACCT GCAACAACGA 
    GTCCCTCCGC TCGCGCCAAA TCCACCCCCT CGACATGTCC CACCTCACGA 
    AGATGACGGG GATGGAGTAC GTGCTCAGCG ACGTGATGGA GCCGCACCTG 
    TTCGTGATCC GGAAGCAGAG GCGGGAGAGC CCCGTGAAGT CCAACGCCAT 
    GCTCGCCTAC TACATCCTCG ATGGCTCCAT CTACCAGGCG CCCCAGCTCT 
    GCAGCGTCTT CGCGTCCCGC ATCAGTAGGG CTATGCATCA CATCTGAAAA 
    GCTTTTACTA CGGCATGTTC AAAGTTGGAG AAAATTGGGC ATGTGGAAAC 
    AGAGCCTGAC ACAGCAGCTT CTGAATCAAA GACGCAGAAG GAAGCAATTG 
    ATTTGAAGGA GTTGAAGCGG GTCGACCATA TCCTAATGTC GTTGCAAAGG 
    AAGCTGCAAC CTGCTCCTCC CCCTCCACCT TTTCCAGAGG GCTATGTACC 
    ATCAGAACAA GAGAAAGCAT CAGATGATCT GTTGGCCTCA GAGGCACTGC 
    CTCCCCAGGT TGATCCTATC ATTGATCAAG GCCCTGCAAA AAGGCCTAGA 
    TTCCAATGAG AGAGGTTGCA TTGATAAGTT AAATTTGACT AACACCACAA 
    TTACCTGTGT TGTAAGTTGA TGATTAGATT CTTTCAGTTC CACAGCTCGG 
    AAGTTAAATA TAAGTTGTGG TTTCAGTCGT AATGGTTATT TTGAAGGATA 
    AATTCAAGGG AGCATAAATC TGATTAGGTG GTACTGGCTG TTTGTCAGGC 
    CTGTTTCTAC TGTGCT

    Gene models with high sequence identity

    1. AT3G21350.1 [+] show detail - RNA polymerase transcriptional regulation mediator-related
      E-value: 7e-79; Score: 291.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Mediator complex, subunit Med6 7.6e-42
    HMMPfam Mediator complex, subunit Med6 6.8e-38

    See the detailed result >

    AT3G21350.1

    Model type
    Protein coding
    Short Description
    RNA polymerase transcriptional regulation mediator-related
    Computational Description
    MED6; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med6, metazoa/plant (InterPro:IPR016820), Mediator complex, subunit Med6 (InterPro:IPR007018); Has 344 Blast hits to 344 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 139; Plants - 37; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR