K07539

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07539

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07539

Determination of introduced cDNA(s)

J013129L10 - Rice Full-length cDNAs - Original: J013129L10

full reading [+] show sequence

GAGCCGCACC GCACGCTTTC TTGCATAAGA ACTCCCCCCC CTCCTCGCTC 
CCCGCCGCCG CCGCCGTTTT CTTGGAGAGG AGAAATCCGT AGGCTCAGAG 
GATTTTTGGT AGTCTTGTTT CGTGATATTC GTGAAGAGGG GGGGAGCTAA 
GGGGGGATTC GTAAGATCAG AATTGGATCA CGCGGGGGCG CGCTCGGGAT 
CGGGGGTTCC AAACACAGCT TCTTCGTTGA ATTTAAGTGG ATGTACTAAT 
GGAGTCAAAG GGTGGCAAAA AGAAGTCTAG CAGTAGTCGT TCCTTGATGT 
ATGAAGCTCC CCTTGGCTAC AGCATTGAGG ACGTTCGACC TGCCGGAGGC 
GTGAAGAAGT TCCAGTCTGC TGCTTACTCC AACTGCGCGA AGAAGCCATC 
CTGATAGCCC TTTCGGCTTC TCCATCCTAG TAGTTTAGGA TTTCTTGCAA 
TTCCATTTTG GCACTTTTCT TCTGACCTAT TTCTCTGGCT GCTGCTTCCT 
GATAATCGAC CAGTTCTCTA GTCTTGCTCC CTGCACTCCT CCCTCCTCCA 
TCTCCGGCAC AGTGTTCTGA CCAACCTGCT CCAATGGGTG TCTTGTCTGC 
TGCTGACCCT CCCCCAGTCT CAGCAATTGG GTTTGAGGGC TATGAGAAGC 
GCCTTGAGAT CACTTTCTCT GAGGCACCTG TCTTTGCTGA CCCTGATGGT 
CGGGGTTTGC GCGCCCTCTC CAGGGCCCAG ATTGACTCTG TTCTGGATCT 
TGCACGGTGC ACCATTGTGT CCGAGCTGTC CAACAAGGAC TTTGACTCCT 
ATGTCCTCTC TGGGTCCAGC CTGTTTATCT ATTCTGATAA GATTGTGATT 
AAGACCTGTG GGACTACAAA GCTCCTGCTC ACAATTCCAA GGATTCTTGA 
GCTTGCTGAA GGGCTTTCTA TGCCACTTGC TGCTGTGAAG TACTCCCGCG 
GGATGTTCAT CTTCCCCAGT GCACAGCCTG CTCCCCACAG GAGCTTCTCT 
GAGGAAGTTG CTGTCCTCAA CCGCTACTTT GGCCATCTGA AATCTGGTGG 
TAATGCTTAT GTGATTGGAG ATCCAGCAAA GCCTGGCCAG AAGTGGCATA 
TCTACTATGC TACTCAGCAC CCGGAGCAAC CTATGGTTAC CCTTGAAATG 
TGCATGACCG GACTGGACAA GGAGAAAGCT TCAGTCTTTT TCAAGACTTC 
TGCTGATGGT CACACATCAT GTGCTAAGGA AATGACAAAA CTCTCGGGCA 
TCTCTGACAT TATCCCAGAG ATGGAGATCT GTGACTTTGA CTTCGAACCC 
TGCGGCTACT CCATGAATGC AATCCATGGC TCAGCGTTTT CTACCATTCA 
TGTGACCCCT GAGGATGGCT TCAGCTACGC CAGTTATGAG GTCGTGGGCT 
TCGACGCCTC TACTCTTGCT TATGGCGACC TGGTGAAGAG GGTCCTCAGG 
TGCTTTGGCC CTTCGGAGTT CTCTGTTGCT GTTACCATCT TTGGTGGGCA 
TGGTCATGCT GGAACATGGG CAAAGGAGCT CAATGCTGAT GCTTACAAAT 
GCAACAACAT GGTAGAGCAG GAGCTGCCCT GTGGTGGCCT CCTCATCTAC 
CAGAGCTTCG ACGCTACTGA AGACGTACCT GTTGCTGTTG GGTCGCCCAA 
ATCTGTTCTG CACTGCTTCG AGGCTGAGAA TATGGTGAAC CCTGCTCCTG 
TTAAGGAAGG TAAACTGGGC AATCTTCTCC CCTGGGGAGA GGATGCGTTG 
GAGGAGAATG ATGGAGTGTT TGATGAGTAA GATGGGACTT CTGGTGACGA 
TTCGCTGCTT TGTTTTCATT CCGTGGCATT TTTATCTGTT GAGGTTGTCG 
TTTGGTTATT CTGTGAAGCA GCCAGCCAGG CTATTAGTAT TTTCGCTTGT 
AAGCATGTGT TCTGATCTTG GGACGTATGC TTGGTCTAAA TAATAATGGT 
GAACTAAAAG CTCTAGGTGG TCAGCTGCGT CTGCCACAAT GAGCATGCGT 
CGGGAGAAAT GTTGTCAAAA CATATGAATA AGTATTTGCG GGAAATTTCC 
TTTGCCTTCT GCTAATGTTC CTTCCGATCT CAATTGTTAA ATTTTGTTGC 
TGCTGGTGTC TAAGAAAGTT CTGCTTGGGA CACTAGATAG TATGGAGAAA 
ACGATTTTCG AAAGTTTCCA CTCTTGTTAT CTCAACTCTG TAGAGCTCCC 
CCTGTTCCAT GGGACTGCAA ATGCCCATGG CACAGGTATA TCTTAAGGTA 
GTACATTAAT GAAAAGTCTG GGAGAATAGC ATGTGCAAAA TGCTTACTAG 
CTCTTATAAG TTAAAAATAG CTGGAAGAAC TGCATTCTAT AGCTTTCCCC 
GTGTTCATGG TTATCTTCTG CAAGATATGG CTGGACGAAG TATATGCCGC 
ATGCTTGGCT CTTGCCGCCC CATTCGCCTT GGCATGGACC ATTGACTTCG 
ATTTTTTTTT TGGACATGTT TATGTATTTG CTTATTGTCC TCTACTTTAC 
ATGTAACAGT AATTTAAAGG AGTGCTGCCT GATCTGATAA TTGCGTTTGG 
AATCCTTTAA TGAGCTTGAT CTTGTCGCGC TTGGAAAGAT GATGCAGCGA 
CCTGTTCGGT ACCCTATGCT TATCTTCTGA CATCCATATC TGTATTATTG 
TTTATGAAGT TGTACGCTTT GTACCCAATT ATCCATGAAT ATATATATTT 
TTTCTTTCTG G

Gene models with high sequence identity

AT3G25570.2 [+] show detail - Adenosylmethionine decarboxylase family protein
E-value: 9e-100; Score: 362.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	S-adenosylmethionine decarboxylase	5.9e-146
superfamily	S-adenosylmethionine decarboxylase, core	2.7e-124
HMMTigr	S-adenosylmethionine decarboxylase subgroup	6.2e-189
HMMPfam	S-adenosylmethionine decarboxylase	2.2e-129
HMMPfam	S-adenosyl-l-methionine decarboxylase leader peptide	3e-31
HMMPIR	S-adenosylmethionine decarboxylase subgroup	2e-168
Gene3D	S-adenosylmethionine decarboxylase, core	3.8e-113

See the detailed result >

AT3G25570.2

Model type: Protein coding
Short Description: Adenosylmethionine decarboxylase family protein
Computational Description: Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4).
Link: InterPro Scan - TAIR