K07545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07545

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07545

Determination of introduced cDNA(s)

  • J033133D12 - Rice Full-length cDNAs - Original: J033133D12

    full reading [+] show sequence

    Nucleotide sequence: J033133D12 - full reading 
    GCCCTTTCCT TCTCATTCCT CGCGGGGAGG GGCGGCGCCG ACGCCTCATC 
    GACTAGTTCA CTCCATCTCC ATCTCCATCT CCATCTCCAT CTACATATAC 
    GGCCGCTTCC AACTGCAATC TCCTGCCTGC CCAGCGATTC TTCCCACGAT 
    TTCCTTTCCT GCTTTTCTCA TCCCTTTTGT TTCTTCACTC CGGCTCACCG 
    CGCGAACCAA TCTTCTGCCT TCACACAACC AATTCATCAA GCAGATCGAG 
    ATGGAGTGCG AGAGCAACTA CAGCAAGGAG CAGAGGCTCA ACGGCGACAG 
    CCTCGTCTTC GACCTTGATG ACACGCTGTA TCCGGTGACC TCCGGCATTG 
    GAGCCGACGT CGTAAGGAAC ATCCAAGCTT ATATGATCGA AAAGCTTGGT 
    GTGGAAGAGA GCATCAGTTT GGAGCTATGC GTCCTCCTCT ACAAGCAGTA 
    TGGAACTACC ATGGCCGGTT TGAGGGCTGT TGGGTACCAG TTTGATTATG 
    ACGACTTCCA CAGCTATGTT CATGGAAGGT TGGCTTATGA GAAAATTAAG 
    CCTGATCCAG TACTTAGGAA CATTCTCCTA AGCTTGCCAA TCCGCAAAGT 
    TGTCTTCACA AATGGTGACA GAATTCATGC TTCAAGGGCC CTCAAGAGGC 
    TAGGAATAGA AGATTGCTTT GAAAGAGTTG TGTGCTTTGA GACACTGAAC 
    CCAACATCAT CCTCTCTTTC GGCAGCTGGT CAGGTTGAAA TTTTTGATAT 
    AATGAAGCAT CTGGCTCATC CAGAGCCTGG GGTTGAACTA CCAAAGTCGC 
    CAATCCTGTG CAAGCCAAAT ATAGATGCCA TGCGGCAAGC TCTCAAGGTT 
    GCCTCCATCA ATCCGAAGAC ATCGATATTG TTTGATGACA GCGCCAGGAA 
    CATCCAGGCT GCGAAGCTAA TAGGAATGTA TACTGTCCTG GTTGGAACTT 
    CTGAAAGAAT AAAGGGTGCT GACCATGCGT TGGAAAGCCT TCACAACATG 
    AAGGAAGCAT TGCCTGAGCT GTGGGATGAA GCTGTGAAGG ATGAGGATGT 
    CAGGAAGTCA AGCAAAGTCG GAATTGAGAC ATCTGTGATC GCTTAAAACT 
    CCCATGAATG TTTCTGATGG AGAACAGCAT GAGATGAGTG GATCATTTTT 
    CAGAGCTCAT CTCTGCACTT TCTTATGTCT GAAAGTAGAT GTGCTAATTT 
    AGGGGAGATT TTACTCTTCT TCATGTACTG TGTGAGTGTG TGACTGCCTG 
    TAATAAATAA ATAAATAAAT GCCATCTATG AACTGACAAT ACAATTCCTG 
    GCG

    Gene models with high sequence identity

    1. AT5G02230.2 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 2e-92; Score: 336.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6.9e-07
    HMMPanther 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 8e-07
    superfamily HAD-like 4.8e-27
    HMMTigr Pyrimidine 5-nucleotidase 2.8e-83
    HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 3 2e-11

    See the detailed result >

    AT5G02230.2

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Computational Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR