K07547

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07547

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07547

Determination of introduced cDNA(s)

  • J023137D03 - Rice Full-length cDNAs - Original: J023137D03

    full reading [+] show sequence

    Nucleotide sequence: J023137D03 - full reading 
    GGGCGGACTC CAAAAACCCT TCCTCAAACC CTCGCCCCCA CAACGCCCCG 
    CGACAGGAGG AAGAAGCTTC TCGTCTGATT TTGTTCCTGG TGACTGAAAG 
    CAGCAGAGAA GCAGATAGGC TCGCGGTGAG CCATGGGAGA AGGCGGAGAC 
    GGGAGGTCCT TCAATTTTCT TCAAGTTCTG TTTGAGGGTG TAATAGCTGG 
    AGGTGCTGCC GGTGTTGTTG TTGAGACAGC TCTGTATCCT ATTGATACAA 
    TAAAAACCAG GCTTCAGGCT GCGAAAGGTG GAAGTAAAAT TCAATGGAAA 
    GGCTTGTATG CTGGGTTAGG TGGAAATATT GCTGGTGTTC TCCCGGCTTC 
    TGCAATCTTT ATAGGAGTGT ATGAACCAAC CAAAAGAAAA CTGCTAGAAA 
    TGTTTCCTGA AAATTTGAGT GCTGTGGCTC ATTTGACTGC AGGGGCAATT 
    GGAGGTGCTG CATCTTCTCT TATTCGTGTT CCCACAGAGG TGGTTAAACA 
    AAGGATGCAA ATGAGTCAAT TCAAGACTGC ACCTGATGCT GTTCGCCTTA 
    TTATCCGTAA AGAAGGATTC AAAGGTCTTT ATGCTGGCTA TGGTTCCTTT 
    CTGTTGCGAG ATCTACCATT TGATGCTATT CAGTTTTGCA TATATGAGCA 
    ACTTCGAATA GGCTATAAAC TGGCGGCAAA GCGAGACTTG AAAGACGGAG 
    AGAATGCACT TATTGGTGCT TTCGCTGGCG CAATTACTGG GGCTATAACA 
    ACACCCCTCG ATGTTTTGAA GACAAGATTG ATGGTTCAGG GACAAGCAAA 
    CCAATATAGG GGAATCATAA GCTGTGCTCA AACAATTCTA CGAGAGGAAG 
    GTGCTGGTGC TTTTTTGAAG GGTATTGAGC CAAGGGTATT ATGGATTGGC 
    ATTGGTGGAT CCATCTTCTT TGGTGTTTTG GAGAAAACGA AGTCAATTCT 
    AGCTGAGAGG AACAGCCGTA AAGTACGAAT ACTATGAAAG GGGGATGATT 
    TTGCGTAGAT GCTGCTATTT TCCCAGGATG TCTACTGATA TGTGTGCTCG 
    ATCAATTAAT TTTAGGAGCT CCGATTCACA TCCTTGTCAA TCCCATCCGA 
    ATCTTGTATT TTGCTAGAGC ATTACATGGG GTTAAAGTTA TAATTTCTGA 
    ATTTCTTTTC GTCTGGCTAG CTTGTTTTGT ACTTGAGCTA AAAAGATAAT 
    TTTCTGGAAG CGAAATGCTT CTGTTC

    Gene models with high sequence identity

    1. AT1G34065.1 [+] show detail - S-adenosylmethionine carrier 2
      E-value: 1e-97; Score: 353.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Mitochondrial substrate/solute carrier 10.735
    ProfileScan Mitochondrial substrate/solute carrier 23.886
    ProfileScan Mitochondrial substrate/solute carrier 24.036
    FPrintScan Mitochondrial carrier protein 5.4e-09
    FPrintScan Mitochondrial carrier protein 5.4e-09
    FPrintScan Mitochondrial carrier protein 5.4e-09
    FPrintScan Mitochondrial carrier protein 5.4e-09
    HMMPfam Mitochondrial substrate/solute carrier 1.8e-11
    HMMPfam Mitochondrial substrate/solute carrier 4.4e-20
    HMMPfam Mitochondrial substrate/solute carrier 8.2e-23
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN 3.1e-115
    HMMPanther Mitochondrial substrate carrier 3.1e-115
    superfamily Mitochondrial substrate carrier 5.1e-69

    See the detailed result >

    AT1G34065.1

    Model type
    Protein coding
    Short Description
    S-adenosylmethionine carrier 2
    Computational Description
    S-adenosylmethionine carrier 2 (SAMC2); FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 1 (TAIR:AT4G39460.2); Has 26837 Blast hits to 14208 proteins in 451 species: Archae - 0; Bacteria - 2; Metazoa - 11303; Fungi - 7745; Plants - 4960; Viruses - 0; Other Eukaryotes - 2827 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR