K07602

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07602

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07602

Determination of introduced cDNA(s)

  • J033034N17 - Rice Full-length cDNAs - Original: J033034N17

    full reading [+] show sequence

    Nucleotide sequence: J033034N17 - full reading
    GACACTACTA GTCCTCTTCA CCCCGCCGCT TCCACCAGAT GGGCCGCAAG 
    AGGAGGGCTA GGGTTTCCCG CGACGGCGAC GGCGAGGAGG AGGAGGAGCC
    CGCGCCGGTC GCCGCAGAGA GCGAGAGCCT CTACGAGATC TTAGGGGTTG
    AGAGGACAGC TTCACAGCAG GAAATAAAGA AGGCTTATCA CAAGTTGGCC
    TTACGTCTTC ATCCAGACAA GAATCCTGGA GATGAGGAAG CCAAGGAGAA
    ATTTCAGCAG CTTCAGAAGG TGATATCTAT TCTTGGGGAT GAGGAGAAAA
    GGGCATTATA TGATGAGACT GGAATTGCTG ATGATGATGC ACTGGTAGGA
    GAAGCTGCAG ACAATCTTCA AGAGTACTTC AGAGCTGTTT ACAAAAAGGT
    TACTGAGGCT GATATTGAAG AATTTGAAGC TAAGTACAGA GGGTCAGATT
    CTGAAAAAAA GGACTTGAAG GATCTATATA CAAAATTTAA AGGCAACATG
    AACAGGCTTT TTTGTTCAAT GATTTGCTCA GATCCAAAGC TTGATTCCCA
    TCGCTTTAAA GATATAATTG ATGAGGCAAT TGCTGAAGGT GAGCTGAAGT
    CAACAAAAGC ATATGATAAA TGGGCCAAGA AGATCTCCGA GATTGAACCT
    CCCACAAACC CATTAGAGAG AAGAGTGAAG AAGAACAAGA AGAAGAGCGA
    GGAGAACGAT CTGATCCTCG CGATCTCACA GCGCAGGGCG CAGCGGAAGG
    ACCGGTTCGA CTCGGTGCTC TCATCCATCA TGTCCAAATG TGACCCAAAG
    GGGAGCAGCA GCTCGGAGCC CACGGAAGAG GAGTTTGAGC AAGCTCGTCA
    GAGGCTCGAG AAAAAGCGTT CCAAGAACCG CAAATGATTC GCCTTGCAGC
    CTCCCTTGTG GCTTGTGCAA TTCTGTTTCA TCGAGTTTGT TAACCAGGCC
    TATCTTTGAC AGATCAGATT GTCTGATATT CTGATCCCTA GTATCTATGT
    GAGATTGGCT GCTTCTGTTG TGGTGCAAGT TCAGGCTGGA ATCTGAACTT
    CCTGCTCTTT TGCTGAAACT GGGGCCGATC TTTAGCATCA CTGCATATGT
    GTATAATCAA AATCTTAAAT GTTTCCTGGA TGTGAACTTG TGATCTAGTT
    TCTGTATAAG TTAATCCAGT AGCTGTCTTG AGTTTTTACG CCTGTAAACG
    ATATAAACAA GAATGCATCA TCAACAGGGA CGAGAGGCGG GTTTGCAATC
    TCGTTTTGGG GTTG

    Gene models with high sequence identity

    1. AT5G06910.1 [+] show detail - J-domain protein 6
      E-value: 2e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heat shock protein DnaJ, N-terminal 3.4e-26
    HMMSmart Heat shock protein DnaJ, N-terminal 8.5e-28
    HMMPfam Heat shock protein DnaJ, N-terminal 1.2e-26
    Gene3D Heat shock protein DnaJ, N-terminal 6.3e-23
    HMMPanther DNAJ HOMOLOG SUBFAMILY C MEMBER 9 2.7e-43
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 2.7e-43
    ProfileScan Heat shock protein DnaJ, N-terminal 21.833
    FPrintScan Heat shock protein DnaJ 0.000000000075
    FPrintScan Heat shock protein DnaJ 0.000000000075
    Coil coiled-coil 0

    See the detailed result >

    AT5G06910.1

    Model type
    Protein coding
    Short Description
    J-domain protein 6
    Curator Summary
    DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.
    Computational Description
    J-domain protein 6 (ATJ6); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G12170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR