K07602

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07602

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07602

Determination of introduced cDNA(s)

  • J033034N17 - Rice Full-length cDNAs - Original: J033034N17

    full reading [+] show sequence

    Nucleotide sequence: J033034N17 - full reading 
    GACACTACTA GTCCTCTTCA CCCCGCCGCT TCCACCAGAT GGGCCGCAAG 
    AGGAGGGCTA GGGTTTCCCG CGACGGCGAC GGCGAGGAGG AGGAGGAGCC 
    CGCGCCGGTC GCCGCAGAGA GCGAGAGCCT CTACGAGATC TTAGGGGTTG 
    AGAGGACAGC TTCACAGCAG GAAATAAAGA AGGCTTATCA CAAGTTGGCC 
    TTACGTCTTC ATCCAGACAA GAATCCTGGA GATGAGGAAG CCAAGGAGAA 
    ATTTCAGCAG CTTCAGAAGG TGATATCTAT TCTTGGGGAT GAGGAGAAAA 
    GGGCATTATA TGATGAGACT GGAATTGCTG ATGATGATGC ACTGGTAGGA 
    GAAGCTGCAG ACAATCTTCA AGAGTACTTC AGAGCTGTTT ACAAAAAGGT 
    TACTGAGGCT GATATTGAAG AATTTGAAGC TAAGTACAGA GGGTCAGATT 
    CTGAAAAAAA GGACTTGAAG GATCTATATA CAAAATTTAA AGGCAACATG 
    AACAGGCTTT TTTGTTCAAT GATTTGCTCA GATCCAAAGC TTGATTCCCA 
    TCGCTTTAAA GATATAATTG ATGAGGCAAT TGCTGAAGGT GAGCTGAAGT 
    CAACAAAAGC ATATGATAAA TGGGCCAAGA AGATCTCCGA GATTGAACCT 
    CCCACAAACC CATTAGAGAG AAGAGTGAAG AAGAACAAGA AGAAGAGCGA 
    GGAGAACGAT CTGATCCTCG CGATCTCACA GCGCAGGGCG CAGCGGAAGG 
    ACCGGTTCGA CTCGGTGCTC TCATCCATCA TGTCCAAATG TGACCCAAAG 
    GGGAGCAGCA GCTCGGAGCC CACGGAAGAG GAGTTTGAGC AAGCTCGTCA 
    GAGGCTCGAG AAAAAGCGTT CCAAGAACCG CAAATGATTC GCCTTGCAGC 
    CTCCCTTGTG GCTTGTGCAA TTCTGTTTCA TCGAGTTTGT TAACCAGGCC 
    TATCTTTGAC AGATCAGATT GTCTGATATT CTGATCCCTA GTATCTATGT 
    GAGATTGGCT GCTTCTGTTG TGGTGCAAGT TCAGGCTGGA ATCTGAACTT 
    CCTGCTCTTT TGCTGAAACT GGGGCCGATC TTTAGCATCA CTGCATATGT 
    GTATAATCAA AATCTTAAAT GTTTCCTGGA TGTGAACTTG TGATCTAGTT 
    TCTGTATAAG TTAATCCAGT AGCTGTCTTG AGTTTTTACG CCTGTAAACG 
    ATATAAACAA GAATGCATCA TCAACAGGGA CGAGAGGCGG GTTTGCAATC 
    TCGTTTTGGG GTTG

    Gene models with high sequence identity

    1. AT5G06910.1 [+] show detail - J-domain protein 6
      E-value: 2e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heat shock protein DnaJ, N-terminal 3.4e-26
    HMMSmart Heat shock protein DnaJ, N-terminal 8.5e-28
    HMMPfam Heat shock protein DnaJ, N-terminal 1.2e-26
    Gene3D Heat shock protein DnaJ, N-terminal 6.3e-23
    HMMPanther DNAJ HOMOLOG SUBFAMILY C MEMBER 9 2.7e-43
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 2.7e-43
    ProfileScan Heat shock protein DnaJ, N-terminal 21.833
    FPrintScan Heat shock protein DnaJ 7.5e-11
    FPrintScan Heat shock protein DnaJ 7.5e-11
    Coil coiled-coil 0

    See the detailed result >

    AT5G06910.1

    Model type
    Protein coding
    Short Description
    J-domain protein 6
    Curator Summary
    DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.
    Computational Description
    J-domain protein 6 (ATJ6); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G12170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR