K07606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07606

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07606

Determination of introduced cDNA(s)

  • J013127P19 - Rice Full-length cDNAs - Original: J013127P19

    full reading [+] show sequence

    Nucleotide sequence: J013127P19 - full reading
    GAGTGTGTTA GAACTGAACT GTGAGGAGCT TCAGAGACTA TGGAGCAAGG 
    TGTAGCTGGA GAAAACGTGT ACAACACAGA GAGACTGCAC AGCTACGGAA
    GTGGTAAACA CCAGTGCTAG TATATGTATG GATTGAAGGT AACGTAGCAT
    TTGCCTTCAC CACAACTCTG CAAGTCACCA GCATGGCTAT CAAGCTTACA
    AAATATCAGT TCTTTTCTTC TCGTGCCACT GCACTGCACC TAAGGAGGAG
    AGAGCTGAAG TTGCTTCCAT TCCCATCTTT TCCCTGCAGC TCTAGTTCAG
    CTCCTAACAC TTGTTCACAG CAAAGTCATC TCCTGTTAGT TTCATCTGCA
    GGACCTAGAG AACAAACATT ACTTCCGGCT GATTCCCGTT CTTCTCTCCC
    TCATGGCATC ACTGATAACG GTACAAGAAA GGAAGGAAGG AGGAGGAGGA
    GGGGGAGAAA GAGGAAGGAG ACAGCAAAAG ATGAAGGGGA GTGTGTTCCA
    TCTGCGGAGG AAGTGTCCAT TAGGGTAAAT ACTCTTTATG AGAGTGGCGA
    CCCCATTGGG AAGAAGGAGT TGGGCCGGTG CGTGGTACAA TGGCTAAAGC
    AGGGTATGCA CTCAATGGCT ATAAAATATG CTTCCACAGA AATGCAGAAC
    GATGGAGCAA CATTCTTACT GGATGGTGGA TCATCTGAAG ACAACCTCGG
    ATTTGTGATG CTTGCACAGC CTTATCTATC AGCAATTCCC ATGCCCAAGG
    GACAGGAGGC GCTCTGCCTC AAGGCCTCTA CTCACTATCC TACCCTCTTT
    GACCACTTTC AAAGGGAACT CCGTGATGTT CTGTTGAAAC AACAGAACCA
    GGGTCTTATT TCTGATTGGC GCACCACTCA ATCTTGGATG CTTCTGAAAG
    AATTGGCTAA CTCAGCTCAG CATCGAGCAG CTGCCCGCAA ACCTAAAGCT
    CCTACTACGC ACAGTACTCT TGGCATAAGT CTTGATAAGA CAAGGTTGAT
    GCAGACCAAA ATTGAAGACT TTGTCAAGAA AATGTCAGAC CTTCTACATA
    TAGAACGAGA TGCGGAGCTG GAGTTTACAC AAGAAGAACT GAATGCCACC
    CCTGTGATGG ATGGGAACTC AAAGAAGCCA CTCAAACCAG TAGAGTACTT
    AGTCACTCAT GGGCAGTCAC AGCAAGAGCA GTGCGATACC ATTTGCAATT
    TGAATGTTAT CAGCAGTTCA ACTGGGTTGG ATGGCCAGCA TCTGGTCCTA
    TTTAGAGTGA AAGATAACCA TAGATTGCCT CCAACCACAC TCTCTCCTGG
    GGATATGGTT TGTATCAGGA CATGTGATAA CCGGGGGGAA ATTACCACAT
    CTTGCATGCA AGGCTTTATA TATAATCTTG GTGAGGATGG TTGCAGCATT
    ACCGTGACAC TGAAATCCCG CCGTGGTGAT CCTACGTTCT CCAAGCTTTT
    TGGGAAAAAT GTGCGGATTG ACAGGATTCA GGCATTGGCT GACGCACTTA
    CATATGAGCG AAATTGTGAA GCACTGATGC TTCTTCAAAG GAAAGGTTTA
    CAGAAAAAGA ATTCTTCCAT TGGAGTAGTA GCCACTCTGT TTGGGGACAA
    GGAAGACATG ATGATGATGG AGCAGAATAA TCTGGCTGAT TGGGGAGAAT
    CAACAATACA TGATGATGAG CTATTGAAAA AGAACAAATA TGACTTTGAT
    GCCTCCCAGT TAAAAGCTAT CACACTAGGC TTGAACAACA AAAGGCCTGT
    CCTAATAATC CAAGGACCTC CTGGCACGGG CAAGACTGGT TTGCTTAGTT
    ATCTCATTGC ATGTGCTGTC CGAAAGGGTG AACGCGTTCT CGTAACTGCT
    CCAAGCAATG CAGCAGTTGA TAACATGGTG GAGAAGTTGT CAGATACTGG
    ACTGGACACA GTACGAGTTG GAAATCCTGC TAGGATATCT CCATCTGTTG
    CTTCAAGGTC CTTGGGAGAG CTTGTGAACA GAAGACTTCA GAAGTTCACA
    GAAGAGTTCG AGAGGAAAAA ATCCGACTTG AGAAAGGACT TGAAGCATTG
    CATACAGGAT GATACATTAG CCGCAGGTAT ACGTCAACTG TTGAAGCAGC
    TTGGGAAGAA CTTT

    Gene models with high sequence identity

    1. AT5G35970.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 655.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 0.000000000000025
    HMMPfam Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain 0.000027
    HMMPanther DNA-BINDING PROTEIN SMUBP-2 1.1e-30
    HMMPanther DNA2/NAM7 HELICASE FAMILY 1.1e-30

    See the detailed result >

    AT5G35970.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6377 Blast hits to 5712 proteins in 1082 species: Archae - 188; Bacteria - 2376; Metazoa - 1211; Fungi - 1055; Plants - 600; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR