K07629

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07629

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07629

Determination of introduced cDNA(s)

  • J023097P16 - Rice Full-length cDNAs - Original: J023097P16

    full reading [+] show sequence

    Nucleotide sequence: J023097P16 - full reading 
    GAGAAGCCAA AGCAAACCGA AGCCCAGTTT CTCTCTCCTC CTCCTCTTCC 
    TCCTCGCATC AGTCCGCATA AAGTCTCCTC CCCTTCCCCC TCCTCCTCCT 
    CCTCTCCAAT CTTGGCAGCA GCAGCAGCAA AGGGGCGGTG GGTTCTTTGT 
    CTCTCTCTCT CGGGCGGATT TCGGTTTCTT CGTGTGTTTG TTGGTTGCGT 
    TGGCGTTTGG AGCGGCGGCG GTGGCGGTGA GTGTGAGTGG TGAGGAGGAG 
    GAGGCCGCCA TGGGCGCGGG CGGGAGGTGG GTGGAGGAGT ACGGGCGTTC 
    GTCGTCGCCG TCGTCCAACC TGCAGTGCTT CTTGGACTGC ACCACCCCCG 
    CCGTCGACAC GCACCTCCTC CCCAAGGCGA ATGGCCGGTT TTCGAGCGAT 
    TCTTGGCACC ACGCCGAGAT GGACAGCGTC GAGTACTTCA ACCTCGCGGA 
    CCTATGGGAG CAGTACTATG AGTGGAGCGC GTACGGGGCT GGAACTACGG 
    TGCAGCTGTA TGGAGGGGAA AGAGTAGTCC AATACTATGT TCCCTACTTG 
    TCAGGGATAC AGCTATATAC CAACAAAGCC CAGACTGCAT CCAGGAGTTT 
    TGGTGAAGAT AATGGCATGG ACTATTGGAG CGATGATGAG GACAATGAGA 
    AGATGTCAAG ATCTTGGAGT TCAACATCTG AAGACTCATT ATTTAACTGT 
    GATGCAATAA GTGGCAATAG AAAACGCCAC GGGCACATGT ATTTTGAGTT 
    CTTCGAGGTT TGCTCTCCTT ATGGAAGGAT TCCACTCATT GACAAGGTGT 
    ATGAACTATC CCAGAGCTAT CCTGGGTTGA CATCCCTGAG AAGTGTTGAC 
    CTTTCGCCTG CTAGTTGGAT GTCAGTTGCC TGGTATCCCA TCTACCATAT 
    TCCCTACCAG CGCAATGTGA AGGACTTATC TGCATGCTTC CTAACTTATC 
    ATACCATTTC CTCTTCATTT CAAGATTACG CGCTCGAGAG CATGGCCAAC 
    GGGAAGCGAA ACGACGAGAC GGAGAAGAAG GTCAGCAAGA CTCATCTTGC 
    TCCGTTCGGG CTCGCGGCGC ACAAGCTGCA GGGTTCTCTC TGGACCAACC 
    CGAGAACAGG GGACCGTGAC AGGATGGTCT CCCTCTTCGG CGCCGCGGAT 
    TCCTGGCTCA AGCAGCTCGG AGTCCAGCAC CATGACTACA ACTACTTCAT 
    CACTCACCCC ATGTGATCTG AACAGCTGAT CTGTGTCATC TGAGAAGAGT 
    AGGTTGCAAC TTGCAAAGAA ACCCCATGGC TGCAGACTTT GGAGAGGAGG 
    CATCAGATTT TTACTTACCC CAGCGACAAT GGTAGCAAAC GTTTTACCGT 
    TTTGTCAAAA TGACACTGAC ATTTGCCGGA TAGAGTTTTA TACCGCTTGA 
    GACTTGAGAC TTGAGAGTTT ACCTGCAGCT GAATATATAC CGAATATATC 
    AGGACTTATA GGTTTTGTGT TTTTCTTGGC TGAAGATGTA AACCGACCGT 
    GTACAGAAAG TTTTGGAACT ATTTTGATAT CCAATATATG TCGTGGTTGG 
    AATTGGATTC

    Gene models with high sequence identity

    1. AT4G03420.1 [+] show detail - Protein of unknown function (DUF789)
      E-value: 1e-81; Score: 300.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G03420.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF789)
    Computational Description
    Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G03610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR