K07634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07634

Determination of introduced cDNA(s)

  • J023150D22 - Rice Full-length cDNAs - Original: J023150D22

    full reading [+] show sequence

    Nucleotide sequence: J023150D22 - full reading 
    GGGCAGCAGC CACAGTTTGG GGATAATCCG ATTCTCTACT CCCCAAGTGA 
    CTCACTCACC GATGGCGCCT CCTCCTATCT CCTCCTCCCT CTCGCTCATG 
    GCCTCCAACC CAATCCCGTC GCCTCCGGTC GCCAAACCGG GCAGGCCGCT 
    CACCGTCGCG GCGTGCAGCA ACAGCAGCAG CAGCTCCTCC TCCTCCTCCC 
    CGTCGTCGAC CTCGTGCTCG GCTGCCTGGA GTCTCCCGGT GGCGACGTCG 
    GCCGGCAGGA GGGGGCTGCT CGCGCTGGGC GCGGGGTTCC TGGCTTCCCC 
    TGGGCTTCTG TGCCCCGCCG GCGACGCCGG AGCGACGCGC ATCGAGTACT 
    ACGCGACGGT GGGGGACAAG CTGTGCGACA TGAACGTCGT CAAGTCGGGG 
    CTCGGCTACT GCGACGTCGA AGTCGGCACC GGCGCCCAGC CCCCGCGCGG 
    CCAGCTCATA AATGTACACT ACACTGCAAG ATTTACTGAC GGGATAGTGT 
    TCGACAGCAC CTACAAGCGA GGACGGCCAC TGACAATGCG CCTTGGCGCA 
    GGCAAGATCC TCCGAGGGCT TGAACAGGGA ATCAGTGGTG GCGGTGGTGT 
    GCCACCCATG CTCGTTGGTG GAAAGCGCAA GCTTATGATA CCTGCAACTT 
    TGGCATACGG ACCTGAACCA GCAGGTTGCT TCTCAGGAGA CTGTAATATT 
    CCCGGCAACA CCACACTCCT ATACGACATC TTCCTGGTTG GATTTTACAA 
    GTGAGCATAT GATGAAAAGG AATATGCATG ACTTGAACAG ACTAGGTGCA 
    AACAAGATTT TCGAGTAAAT TTTGGCGTTT CATACAAGAG GCGGGACTAC 
    GGACAGATGA AGAGAAAGGG TGCGACATGC CTAAGCCCAG ACGCCGAAGG 
    CAAATGCGTC ACCGGAGCTC CTTGGGTCTC CAATACGCAG AGTACTACAT 
    TTGCAATCTG TACCAAGAAG TGAAAGGATA TATAACAAAC CGGTCCTCTG 
    ATATACTATC AAATTGGTCT TATGTTTTCT AGAGAAGAAA AGTCTTGTGT 
    TTGTGTAAGT ATAACGTTGT AAAGACATGT CTCATTATTC ATACTGTCAT 
    TGGTAGAGCC AAACACAACA AAAATTCCCA TC

    Gene models with high sequence identity

    1. AT4G39710.1 [+] show detail - FK506-binding protein 16-2
      E-value: 1e-51; Score: 200.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 22.674
    Gene3D no description 6.8e-33
    HMMPanther FK506-BINDING PROTEIN 2 7.7e-31
    HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 7.7e-31
    superfamily FKBP-like 4.6e-31
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 3.3e-21

    See the detailed result >

    AT4G39710.1

    Model type
    Protein coding
    Short Description
    FK506-binding protein 16-2
    Computational Description
    FK506-binding protein 16-2 (FKBP16-2); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR