K07647

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07647

Determination of introduced cDNA(s)

  • J013146D21 - Rice Full-length cDNAs - Original: J013146D21

    full reading [+] show sequence

    Nucleotide sequence: J013146D21 - full reading 
    GATCCCTCTC CCATCGCCGC GGCGGCCTAT CCATCTCTCT CCCCCGCACA 
    CGCTCTCCCT CCCATGGCGC TCTCCCTCAC CACCGCCTTC TCCCACCTCT 
    CCCTCCCCTC CACCTCCAAG TTCCACCCGC TCCCCCTCCT CCACCTCCGC 
    TTCCCCTCCT CCTCCTCCTC CCGCCGCGCC GCGCGCCTCG CGCTCGCCGC 
    CTCCGCCGCC GAGGCCGCCG AGCCTGTCGA GGTGGAGGAG GCGCCCGCCG 
    AGGACGGGGC GGATGAGGTG GTGGCCGTGG AGGACGAGCT GTCCGGACCG 
    GCGCTGCGAA AGTACGTGAA GCAGCGGCTT CCCGGGGGCT TCGCGGCGCA 
    GCGGATCACC GCCACGGGCC GCCGCAAGAC GGCCATCGCC CGCGTCGTGC 
    TCCAGGAGGG CACCGGAAGG GTGTTCATCA ACTTCCGCGA TGCCAAGGAG 
    TATTTGCAAG GAAATCCAAT GTGGATGGAG TACTGCAAGG TACCCCTGGT 
    GACCCTAGGG TTCGAGAACA GCTACGACGT CTTCGTCAAA GTTCACGGGG 
    GTGGTCTCTC GGGCCAAGCC CAGGCCATTT GCCTCGGCGT CGCCCGTGCA 
    CTGGTGAAGA TCAGCACCGC AAACAAAGTT ACTCTGAGGG GAGAAGGTTT 
    GCTGACAAGA GACACCCGTA TAGTTGAAAG GAAGAAGGCT GGTCTTAAGA 
    AGGCACGCAA GCGCCCGCAG TTCTCAAAGC GTTAGAGTAT GCACAACCTT 
    GTTGTTAGAC TCATTTAAAA GTTTTACATT CCACAGTTTG TATTGGCCCT 
    TCTCTGTTAT TTTCTGTGCA AATTATGTGC TCCTCACCAC AGACTTGTAA 
    TCTTCGTTCT CTGTAAGCAA TTTTATTGAG GTCACAAAAG GCAATTATCT 
    TGAAATCATT CCTG

    Gene models with high sequence identity

    1. AT1G74970.1 [+] show detail - ribosomal protein S9
      E-value: 5e-54; Score: 208.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S9, conserved site 0
    HMMPanther Ribosomal protein S9 7.5e-38
    Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 5.8e-41
    superfamily Ribosomal protein S5 domain 2-type fold 1.6e-44
    HMMPfam Ribosomal protein S9 6.3e-41

    See the detailed result >

    AT1G74970.1

    Model type
    Protein coding
    Short Description
    ribosomal protein S9
    Curator Summary
    ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
    Computational Description
    ribosomal protein S9 (RPS9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S9, conserved site (InterPro:IPR020574); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G49080.1); Has 7998 Blast hits to 7997 proteins in 2816 species: Archae - 205; Bacteria - 5347; Metazoa - 103; Fungi - 127; Plants - 149; Viruses - 0; Other Eukaryotes - 2067 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR