K07650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • abnormal (PATO:0000460)
    (Root::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07650

Determination of introduced cDNA(s)

  • J023044O08 - Rice Full-length cDNAs - Original: J023044O08

    full reading [+] show sequence

    Nucleotide sequence: J023044O08 - full reading
    GTGCCATCGA TCACCATTAA TTCATCTCCA TCGACAAAGC TAGCTAAGCC 
    CAGTCATGGC CGCCTCTCCC GCAATGCCGT CACTCCTCCT CCTCCTCCTC
    CTAGCCGTTC TCGTCTCGGC GGCCGATGCC TACGACTCCG CCGCCAGCGC
    CAACACCAAC GCCGGCGCCA TCCCCGACCC CAACATCTTG AACATGGAGG
    CCATGTGCCC CAAGACGACG GACGTGAAGG CGTGCCAGCA ACTGGTGAAG
    AACATGCCGT CCAACATCGT CGCGGGGAAG AAGGACGCCA GGAGCATCGC
    CCGGGGGTGC ATCGCCACCG CCTGGTTCGT GGCGAGGGAC GGCGCCAAGG
    ACTGCACCGC CGCCGTGGAC GAGTGCAAGG ACAAGGTCGA CCAGTGCCTC
    GACAGCTGCC GCCACGCCTT CGCCGCCGTG AACGACGCCC TGGAGCCCCA
    GGGCACCGGC GACGACGCCG TCAAGGTCCC CGAGGACGAG AAGCTCCTCG
    CCATCCACGC CAGCCTCACG CAGCTGCTCC GCGGCCCCAC CGGCACGCGC
    CGCCCGCCCC TCTGCAACAC CTGCTGCCAG GACGGCTCGT GCACGGAGGA
    GAAGAAGCGC AACGTCGTCG CGCTGTTCGT GCAATTGTGG AGCTTGCTGG
    ATTTCGCCGA CGCGGTGCTC GAGGACCTGT ATCCTCTGAC GAAGCTGCCA
    GGGGACAAGG CCGCGGGATC AGATACCTCT GCGGCGGCGG CCGGATCAAC
    CGCCGACAAG GAGACCTCTG CGGCGGCTGG ATCAACCGCC GACACGGCGA
    CCTCTGCGGC GGCCGGATCA ACCTCCGCAA AGGAGACATC TCCAGTAGCC
    GGATCAACCG CCGATAAGAC CTATGCAGCG GCCGGATCAG CTCCTCCTGT
    CGTCGACACT GCGCCTGCTC CTCCCGTGAC AACTTATGAT TAATTACAAA
    CATTCGGTAT TTCATATTTT GGAGGATGCT ATAGGAACTT TAAATAACTC
    TTCCAAAATT TTTAGGACAC CAACGAAAAT CCTTACAAAA TTTTGACTAA
    TCAACGTTTC TAAGGAGTTT AACAAATTTC TATACGTGTA GCTTTTTCTT
    ACATATCTGA GTAGGTGCAT TGCTGAGGGC AGGGTGCGCC TTCCGTGGTT
    GTCATTCGAA ATTGTCTTTG TAACCTCGTC AATTTAATGA AGTTTAGAAC
    C

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J033149N11 - Rice Full-length cDNAs - Original: J033149N11

    full reading [+] show sequence

    Nucleotide sequence: J033149N11 - full reading
    GGCGGCGACA CTGACAGTCT CCTCTTCCAC CACTGGCCTA GGGCAAGAGA 
    TCGACGAGAG GAGCGGAGGG AGGAGGAGGA GATGGGCGGA GTGGAGCAGG
    AGCAGCTGCT CAGCCTGGGC GTCCTCATCG ACATCGTCGA CGAGCAGTGG
    ATGCGCGACA CCCTCCCAGC CGACGATGTC CCCGTGCCGC CCGCCATGGC
    CGTGAAGACG GAGGAGGCGG AGGATCCAGC ACCCGCCAAT CAGGAAAGCC
    AACCAGCACA AGGGGATGTG TGGCGTGATT TCACATTGGA GAATCTCTGA
    TCACTTGTGA CCTACAAGTG CTTCCAGAGA TGAATATACC ATGCTGGGAA
    TCTAGGAGCT ACGTGGTCAT TGCAATTTCT GAGCTTCATA TAACTATAAG
    GTCATCTGAA CTTAGCGTAC TATCTGGTTT TGTTTCAGCT GTAGTTCGTC
    GAACCCATGC TTTAAACCGA TGTAAATGCT CCAGATATTG GTAGCACATT
    GCTGCATGAT GACACCGAAC CTTGTGATGA GAAATTATAT GTTGTGAACT
    ATGATGGTGA TGAGAACAGT CATTCAGATC TGGAACATAT CAAATCACTG
    GTAGTTTGCA GTC

    Gene models with high sequence identity

    1. AT1G73177.1 [+] show detail - bonsai
      E-value: 3e-10; Score: 62.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G73177.1

    Model type
    Protein coding
    Short Description
    bonsai
    Curator Summary
    The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.
    Computational Description
    BONSAI (BNS); Has 44 Blast hits to 44 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR