K07650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • abnormal (PATO:0000460)
    (Root::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07650

Determination of introduced cDNA(s)

  • J023044O08 - Rice Full-length cDNAs - Original: J023044O08

    full reading [+] show sequence

    Nucleotide sequence: J023044O08 - full reading 
    GTGCCATCGA TCACCATTAA TTCATCTCCA TCGACAAAGC TAGCTAAGCC 
    CAGTCATGGC CGCCTCTCCC GCAATGCCGT CACTCCTCCT CCTCCTCCTC 
    CTAGCCGTTC TCGTCTCGGC GGCCGATGCC TACGACTCCG CCGCCAGCGC 
    CAACACCAAC GCCGGCGCCA TCCCCGACCC CAACATCTTG AACATGGAGG 
    CCATGTGCCC CAAGACGACG GACGTGAAGG CGTGCCAGCA ACTGGTGAAG 
    AACATGCCGT CCAACATCGT CGCGGGGAAG AAGGACGCCA GGAGCATCGC 
    CCGGGGGTGC ATCGCCACCG CCTGGTTCGT GGCGAGGGAC GGCGCCAAGG 
    ACTGCACCGC CGCCGTGGAC GAGTGCAAGG ACAAGGTCGA CCAGTGCCTC 
    GACAGCTGCC GCCACGCCTT CGCCGCCGTG AACGACGCCC TGGAGCCCCA 
    GGGCACCGGC GACGACGCCG TCAAGGTCCC CGAGGACGAG AAGCTCCTCG 
    CCATCCACGC CAGCCTCACG CAGCTGCTCC GCGGCCCCAC CGGCACGCGC 
    CGCCCGCCCC TCTGCAACAC CTGCTGCCAG GACGGCTCGT GCACGGAGGA 
    GAAGAAGCGC AACGTCGTCG CGCTGTTCGT GCAATTGTGG AGCTTGCTGG 
    ATTTCGCCGA CGCGGTGCTC GAGGACCTGT ATCCTCTGAC GAAGCTGCCA 
    GGGGACAAGG CCGCGGGATC AGATACCTCT GCGGCGGCGG CCGGATCAAC 
    CGCCGACAAG GAGACCTCTG CGGCGGCTGG ATCAACCGCC GACACGGCGA 
    CCTCTGCGGC GGCCGGATCA ACCTCCGCAA AGGAGACATC TCCAGTAGCC 
    GGATCAACCG CCGATAAGAC CTATGCAGCG GCCGGATCAG CTCCTCCTGT 
    CGTCGACACT GCGCCTGCTC CTCCCGTGAC AACTTATGAT TAATTACAAA 
    CATTCGGTAT TTCATATTTT GGAGGATGCT ATAGGAACTT TAAATAACTC 
    TTCCAAAATT TTTAGGACAC CAACGAAAAT CCTTACAAAA TTTTGACTAA 
    TCAACGTTTC TAAGGAGTTT AACAAATTTC TATACGTGTA GCTTTTTCTT 
    ACATATCTGA GTAGGTGCAT TGCTGAGGGC AGGGTGCGCC TTCCGTGGTT 
    GTCATTCGAA ATTGTCTTTG TAACCTCGTC AATTTAATGA AGTTTAGAAC 
    C

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J033149N11 - Rice Full-length cDNAs - Original: J033149N11

    full reading [+] show sequence

    Nucleotide sequence: J033149N11 - full reading 
    GGCGGCGACA CTGACAGTCT CCTCTTCCAC CACTGGCCTA GGGCAAGAGA 
    TCGACGAGAG GAGCGGAGGG AGGAGGAGGA GATGGGCGGA GTGGAGCAGG 
    AGCAGCTGCT CAGCCTGGGC GTCCTCATCG ACATCGTCGA CGAGCAGTGG 
    ATGCGCGACA CCCTCCCAGC CGACGATGTC CCCGTGCCGC CCGCCATGGC 
    CGTGAAGACG GAGGAGGCGG AGGATCCAGC ACCCGCCAAT CAGGAAAGCC 
    AACCAGCACA AGGGGATGTG TGGCGTGATT TCACATTGGA GAATCTCTGA 
    TCACTTGTGA CCTACAAGTG CTTCCAGAGA TGAATATACC ATGCTGGGAA 
    TCTAGGAGCT ACGTGGTCAT TGCAATTTCT GAGCTTCATA TAACTATAAG 
    GTCATCTGAA CTTAGCGTAC TATCTGGTTT TGTTTCAGCT GTAGTTCGTC 
    GAACCCATGC TTTAAACCGA TGTAAATGCT CCAGATATTG GTAGCACATT 
    GCTGCATGAT GACACCGAAC CTTGTGATGA GAAATTATAT GTTGTGAACT 
    ATGATGGTGA TGAGAACAGT CATTCAGATC TGGAACATAT CAAATCACTG 
    GTAGTTTGCA GTC

    Gene models with high sequence identity

    1. AT1G73177.1 [+] show detail - bonsai
      E-value: 0.0000000003; Score: 62.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G73177.1

    Model type
    Protein coding
    Short Description
    bonsai
    Curator Summary
    The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.
    Computational Description
    BONSAI (BNS); Has 44 Blast hits to 44 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR