K07720

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07720

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07720

Determination of introduced cDNA(s)

  • J023013H23 - Rice Full-length cDNAs - Original: J023013H23

    full reading [+] show sequence

    Nucleotide sequence: J023013H23 - full reading 
    GATTGTTTCT CCTCGCCGCT TCCACCTCTC TCGCGCCGCC GCCGCCGCCG 
    AGCGCCTGGA GCAGCGTCAG CCATGGCCGT AGGTAAGAAC AAGCGCATCT 
    CCAAGGGGAA GAAGGGATCC AAGAAGAAGA CCGTCGATCC CTTTGCTAAG 
    AAGGACTGGT ATGATATCAA GGCCCCGTCG GTGTTCAATG TGCGGAACAT 
    CGGCAAGACC CTCGTGTCCA GGACACAGGG TACAAAGATT GCTTCTGAGG 
    GCCTAAAGCA TAGAGTGTTT GAGGTCTCCT TAGCTGATCT CCAGAACGAT 
    GAGGATCAGG CGTACAGGAA GATCAGACTT CGTGCTGAGG ATGTGCAAGG 
    GAAGAACGTG CTCACCAACT TTTGGGGCAT GTCGTTTACT ACCGATAAGC 
    TCAGATCACT TGTTAAGAAG TGGCAGACAC TGATTGAGGC TCATGTGGAT 
    GTCAAAACCA CAGACGGCTA CATGCTGCGT CTGTTCTGTA TCGGCTTCAC 
    CAAGCGGCGG CCTAACCAGG TGAAGAGGAC TTGCTATGCT CAAGCGAGTC 
    AGATCAGACA GATTCGTCGC AAGATGGTTG AAATCATGGC CAACCAGGCT 
    TCAAGCTGTG ATTTGAAAGA GCTAGTTTCA AAGTTCATTC CTGAAGTTAT 
    TGGGAAGGAA ATTGAGAAGG CGACATCCAG TATTTTCCCC CTTCAGAATG 
    TGTTTGTCCG CAAAGTGAAG ATTCTAAAGG CCCCGAAATT TGACCTGGGG 
    AAGCTCATGG AGGTGCATGG TGACTATGCC AAGGAGGACA TCGGTACGAA 
    GCTTGATAGG CCTGCAGAAG ATGAGGCCAT GGCCGGGCAG GAGGTCGCTG 
    CTGCCGAGTA GAGATTATCA CTTATTTTGC TGCCCGTTTA TTTAGACAAC 
    AAGTAAACAG CTATCTAGTT GTGGATCGTG AACATCCTAG CCTGTGTCAA 
    TGGCAGATAT TCTGAATAGT TTGTTGGGAT TACTTGCCAG CTGCATATTT 
    GCTTTCTGAT GAGAAATGAA TGTTTTTGAG TCTATGCGTT TGCTTTGTTT 
    GGTCTTGATG ATGAAGTTAA GAATTTTGAA GTAATTGTTT GGTCTGG

    Gene models with high sequence identity

    1. AT4G34670.1 [+] show detail - Ribosomal protein S3Ae
      E-value: 2e-113; Score: 405.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S3Ae, conserved site 0
    HMMPanther Ribosomal protein S3Ae 9.7e-111
    HMMPfam Ribosomal protein S3Ae 2.3e-83

    See the detailed result >

    AT4G34670.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S3Ae
    Computational Description
    Ribosomal protein S3Ae; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site (InterPro:IPR018281), Ribosomal protein S3Ae (InterPro:IPR001593); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3Ae (TAIR:AT3G04840.1); Has 1362 Blast hits to 1357 proteins in 408 species: Archae - 234; Bacteria - 1; Metazoa - 463; Fungi - 247; Plants - 191; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR