K07809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07809

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07809

Determination of introduced cDNA(s)

  • J023110G01 - Rice Full-length cDNAs - Original: J023110G01

    full reading [+] show sequence

    Nucleotide sequence: J023110G01 - full reading
    GACCACAAAG CACAAAGGCC AGAGCGAAGG CCACTCCAAT GGATCACTCC 
    ACCTCCCTGC TCCGGCTCAT CTTCCTCGCC CTCGGCGCAG CCCTCGTCGT
    CCTTGTCGTT CGCTCCGCGT TCCGCCTTCC CGGCGACATC GACACGACTA
    CGACCTCTCT GTTCGATGAT GGCAACGGCG GCAGCTGCAC CAGGTTCTCG
    CCGTGGGCGT GCCGGCAAGG GCGGGGCGAC CCGAGGTCGA AGCCGTCCAA
    GCCGCGGCGA CCGTCGCACG AGTCCGACGT GCCGCGGCAC CCGCTCGACC
    CACTCACGGT GAGGGAGGTG AACCGCGTCC GCGAGCTCCT CCGCGCGCAC
    CCGCTGTTTG CGTCGGCGCC GTCGTCCCTG TTCGTGCACT CGCTGGAGCT
    CGACGAGCCG GAAAAGTCCG TCGTCAAGAG CTGGCGGAAG GGCGCCGACC
    CGCTCCCGCC TCGCCGCGCC GTGGCCGTCG TCCGGTTCCG CGGCGAGTCC
    CACGTCCTCG GCGTCGACTT CAGCGAGGGC GACGGCGCGG TGACTCCTCT
    GCCTGTCCCT GCCTCCGGTT ACCCGATGAT GAACATGGAC GAGCAGACCA
    GCCTCTGCTT CGCGCCGTTC AAGGACGAGG CGTTCAACGC CAGCCTCCTC
    CGCCGTGGCG TCAGGGCCTC CGACGTCGCC TGCCTGCCCA TCTCCCTCGG
    CTGGTACGGC CCAGCGGAGG AGAACCGGCG ACTCATCAAG AGCCAGTGCT
    TCTCCACCGA GGGCACGGCC AACTTCTACA TGCGCCCCAT CGAGGGCCTC
    ACCGTGCTGG TCGACATGGA CACGGCGGAG GTCCTCCACG TCTCCGACCG
    CGGCGCCGGC ATCCCCATCC CCGCCGCCGC GAACACCGAC TACCGGCACG
    GACACTCGGC GCCGACTCCG GCGGAGGCGC AAGCGCAGGG GCGGCACGGG
    TACCAGACCG TCCGCGTGCC GTCGATGGAG CCGCCGGCGG GCGGGCCGGG
    GTTCGAGCTG GTCGACGGGC ACACGGTGCG GTGGGGCGGG TGGGAGTTCC
    ACCTGAAGCC CGACGCGCGC GCCGGCATGG TGGTGTCGCG GGCGCGGGTG
    CAGGACCCGG CGACCGGCGA GCACCGCGAC GTGATGTACA AGGGCATGGC
    GTCGGAGCTG TTCGTGCCGT ACATGGACCC GACGGAGGCG TGGTACTTCA
    AGACGTACAT GGACGCCGGC GAGTACGGCT TCGGGCTGCA GGCCATGCCG
    CTCGTCCCGC TCAACGACTG CCCGCGCCAC GCCCGCTACC TCGACGCCGT
    CTTCGTCGCC GCCGACGGCC GCCCCTACGT GCGCGAGAAC ATGATCTGCG
    TCTTCGAGCG CTACGCCGGC GACATCGCGT GGCGACACTC CGAGAGCCCC
    ATCACCGGCA TGGACATAAG GGAGTCGCGG CCGAAGGTGA CGCTGGTGGC
    GCGCATGGCG GCGTCGGTGG CCAACTACGA CTATATCGTC GACTGGGAGT
    TCCAGATGGA CGGCCTCGTT CGCATCAAGG TTGGGCTAAG TGGGATCCTC
    ATGGTGAAGG GCACCCAGTA CTCCCACATG AACCAGGTCC ATCAAAATGA
    CAATATGTAC GGCACCCTTC TGTCTGAGAA CGTTATTGGC GTCATCCATG
    ACCACTTTGT CACTTTCCGG CTCGACATGG ACATTGACGG CGCCGACAAC
    TCCTTCGTCA AGGTGGCGAT GGCACGACAG AACACCGGCG CCGGCGAATC
    CCCTCGTAAG AGCTACCTGA AGGCTACCCG ACATGTCGCA AGGACGGAGA
    AAGATGCCCA GGTCCGCCTG AAGCTATATG AGCCATCCGA GTTCCACATT
    GTCAACCCCA TGAAGAAGAC ACGAGTTGGG AACCCTGTTG GTTATAAGGT
    TGTCCCAGCC GGTACTGCAG CTAGCCTGTT GGATCCAGAG GACCCACCTC
    AGAAGAGGGG TGCATTCACA AATAATCAGA TTTGGGTGAC ACCCTACAAC
    AAAACAGAGG AATGGGCTGG TGGTCTATTT GTCTACCAGA GCAAAGGGGA
    GGACACACTT GCAACTTGGT CCGAAAGGGA CCGTCCGATC GAGAACAAGG
    ACCTGGTGCT GTGGTACACG CTGGGGTTTC ACCATGTCCC GTGCCAGGAG
    GACTTCCCCA TCATGCCCAC GGTGTCGTCC AGCTTCGACC TTAAGCCAGT
    GAACTTCTTT GAGAGCAACC CCATCCTAGG GCAGCGTCCG ACCCAGGAGA
    ACGACCTGCC GGTGTGTGCC GCCGCTGCCA CGACCTCTTG AGACGACAGC
    GGATCACCGA CATGTGTGCG TGCATGGTCG ATGCTTCGGT GTATCGATCT
    ACTGATATGG ATTGTTCATA GTGAAAGAAT GTATCGGTAC ATCTACGGAT
    TTGGAGCTAG CCATGGCTGG CTATCTATGT TGCTCTATAT ATGTATGAGC
    GGATGTATGT GCACTGCAGT GGTATGAACA TAATTGAGAA CCTGAAAGGA
    GCAGGCTTCA AGGCTGC

    Gene models with high sequence identity

    1. AT4G12290.1 [+] show detail - Copper amine oxidase family protein
      E-value: 0; Score: 879.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Copper amine oxidase 0
    Gene3D Copper amine oxidase, N2/N3-terminal 4.6e-22
    Gene3D Copper amine oxidase, N2/N3-terminal 2.5e-30
    Gene3D Copper amine oxidase, C-terminal 9.4e-140
    HMMPanther COPPER AMINE OXIDASE 5.4e-270
    HMMPanther Copper amine oxidase 5.4e-270
    HMMPfam Copper amine oxidase, C-terminal 5.7e-146
    HMMPfam Copper amine oxidase, N3-terminal 3.4e-26
    HMMPfam Copper amine oxidase, N2-terminal 8.1e-19
    superfamily Copper amine oxidase, C-terminal 1.3e-147
    superfamily Copper amine oxidase, N-terminal 1.3e-36
    superfamily Copper amine oxidase, N-terminal 1.5e-18

    See the detailed result >

    AT4G12290.1

    Model type
    Protein coding
    Short Description
    Copper amine oxidase family protein
    Computational Description
    Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR