K07809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07809

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07809

Determination of introduced cDNA(s)

  • J023110G01 - Rice Full-length cDNAs - Original: J023110G01

    full reading [+] show sequence

    Nucleotide sequence: J023110G01 - full reading 
    GACCACAAAG CACAAAGGCC AGAGCGAAGG CCACTCCAAT GGATCACTCC 
    ACCTCCCTGC TCCGGCTCAT CTTCCTCGCC CTCGGCGCAG CCCTCGTCGT 
    CCTTGTCGTT CGCTCCGCGT TCCGCCTTCC CGGCGACATC GACACGACTA 
    CGACCTCTCT GTTCGATGAT GGCAACGGCG GCAGCTGCAC CAGGTTCTCG 
    CCGTGGGCGT GCCGGCAAGG GCGGGGCGAC CCGAGGTCGA AGCCGTCCAA 
    GCCGCGGCGA CCGTCGCACG AGTCCGACGT GCCGCGGCAC CCGCTCGACC 
    CACTCACGGT GAGGGAGGTG AACCGCGTCC GCGAGCTCCT CCGCGCGCAC 
    CCGCTGTTTG CGTCGGCGCC GTCGTCCCTG TTCGTGCACT CGCTGGAGCT 
    CGACGAGCCG GAAAAGTCCG TCGTCAAGAG CTGGCGGAAG GGCGCCGACC 
    CGCTCCCGCC TCGCCGCGCC GTGGCCGTCG TCCGGTTCCG CGGCGAGTCC 
    CACGTCCTCG GCGTCGACTT CAGCGAGGGC GACGGCGCGG TGACTCCTCT 
    GCCTGTCCCT GCCTCCGGTT ACCCGATGAT GAACATGGAC GAGCAGACCA 
    GCCTCTGCTT CGCGCCGTTC AAGGACGAGG CGTTCAACGC CAGCCTCCTC 
    CGCCGTGGCG TCAGGGCCTC CGACGTCGCC TGCCTGCCCA TCTCCCTCGG 
    CTGGTACGGC CCAGCGGAGG AGAACCGGCG ACTCATCAAG AGCCAGTGCT 
    TCTCCACCGA GGGCACGGCC AACTTCTACA TGCGCCCCAT CGAGGGCCTC 
    ACCGTGCTGG TCGACATGGA CACGGCGGAG GTCCTCCACG TCTCCGACCG 
    CGGCGCCGGC ATCCCCATCC CCGCCGCCGC GAACACCGAC TACCGGCACG 
    GACACTCGGC GCCGACTCCG GCGGAGGCGC AAGCGCAGGG GCGGCACGGG 
    TACCAGACCG TCCGCGTGCC GTCGATGGAG CCGCCGGCGG GCGGGCCGGG 
    GTTCGAGCTG GTCGACGGGC ACACGGTGCG GTGGGGCGGG TGGGAGTTCC 
    ACCTGAAGCC CGACGCGCGC GCCGGCATGG TGGTGTCGCG GGCGCGGGTG 
    CAGGACCCGG CGACCGGCGA GCACCGCGAC GTGATGTACA AGGGCATGGC 
    GTCGGAGCTG TTCGTGCCGT ACATGGACCC GACGGAGGCG TGGTACTTCA 
    AGACGTACAT GGACGCCGGC GAGTACGGCT TCGGGCTGCA GGCCATGCCG 
    CTCGTCCCGC TCAACGACTG CCCGCGCCAC GCCCGCTACC TCGACGCCGT 
    CTTCGTCGCC GCCGACGGCC GCCCCTACGT GCGCGAGAAC ATGATCTGCG 
    TCTTCGAGCG CTACGCCGGC GACATCGCGT GGCGACACTC CGAGAGCCCC 
    ATCACCGGCA TGGACATAAG GGAGTCGCGG CCGAAGGTGA CGCTGGTGGC 
    GCGCATGGCG GCGTCGGTGG CCAACTACGA CTATATCGTC GACTGGGAGT 
    TCCAGATGGA CGGCCTCGTT CGCATCAAGG TTGGGCTAAG TGGGATCCTC 
    ATGGTGAAGG GCACCCAGTA CTCCCACATG AACCAGGTCC ATCAAAATGA 
    CAATATGTAC GGCACCCTTC TGTCTGAGAA CGTTATTGGC GTCATCCATG 
    ACCACTTTGT CACTTTCCGG CTCGACATGG ACATTGACGG CGCCGACAAC 
    TCCTTCGTCA AGGTGGCGAT GGCACGACAG AACACCGGCG CCGGCGAATC 
    CCCTCGTAAG AGCTACCTGA AGGCTACCCG ACATGTCGCA AGGACGGAGA 
    AAGATGCCCA GGTCCGCCTG AAGCTATATG AGCCATCCGA GTTCCACATT 
    GTCAACCCCA TGAAGAAGAC ACGAGTTGGG AACCCTGTTG GTTATAAGGT 
    TGTCCCAGCC GGTACTGCAG CTAGCCTGTT GGATCCAGAG GACCCACCTC 
    AGAAGAGGGG TGCATTCACA AATAATCAGA TTTGGGTGAC ACCCTACAAC 
    AAAACAGAGG AATGGGCTGG TGGTCTATTT GTCTACCAGA GCAAAGGGGA 
    GGACACACTT GCAACTTGGT CCGAAAGGGA CCGTCCGATC GAGAACAAGG 
    ACCTGGTGCT GTGGTACACG CTGGGGTTTC ACCATGTCCC GTGCCAGGAG 
    GACTTCCCCA TCATGCCCAC GGTGTCGTCC AGCTTCGACC TTAAGCCAGT 
    GAACTTCTTT GAGAGCAACC CCATCCTAGG GCAGCGTCCG ACCCAGGAGA 
    ACGACCTGCC GGTGTGTGCC GCCGCTGCCA CGACCTCTTG AGACGACAGC 
    GGATCACCGA CATGTGTGCG TGCATGGTCG ATGCTTCGGT GTATCGATCT 
    ACTGATATGG ATTGTTCATA GTGAAAGAAT GTATCGGTAC ATCTACGGAT 
    TTGGAGCTAG CCATGGCTGG CTATCTATGT TGCTCTATAT ATGTATGAGC 
    GGATGTATGT GCACTGCAGT GGTATGAACA TAATTGAGAA CCTGAAAGGA 
    GCAGGCTTCA AGGCTGC

    Gene models with high sequence identity

    1. AT4G12290.1 [+] show detail - Copper amine oxidase family protein
      E-value: 0; Score: 879.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Copper amine oxidase 0
    Gene3D Copper amine oxidase, N2/N3-terminal 4.6e-22
    Gene3D Copper amine oxidase, N2/N3-terminal 2.5e-30
    Gene3D Copper amine oxidase, C-terminal 9.4e-140
    HMMPanther COPPER AMINE OXIDASE 5.4e-270
    HMMPanther Copper amine oxidase 5.4e-270
    HMMPfam Copper amine oxidase, C-terminal 5.7e-146
    HMMPfam Copper amine oxidase, N3-terminal 3.4e-26
    HMMPfam Copper amine oxidase, N2-terminal 8.1e-19
    superfamily Copper amine oxidase, C-terminal 1.3e-147
    superfamily Copper amine oxidase, N-terminal 1.3e-36
    superfamily Copper amine oxidase, N-terminal 1.5e-18

    See the detailed result >

    AT4G12290.1

    Model type
    Protein coding
    Short Description
    Copper amine oxidase family protein
    Computational Description
    Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR