K07850

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07850

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07850

Determination of introduced cDNA(s)

  • J023001A14 - Rice Full-length cDNAs - Original: J023001A14

    full reading [+] show sequence

    Nucleotide sequence: J023001A14 - full reading 
    GAGATTGGCT TCGGCTCCTT CTTCCATCGC CGTCCTGTTC AACGTTCAAA 
    CCCTTCCTCC TCCCGTCGCC TAGTCGCCAT TGGCGACCTC CTCCTCCTCC 
    ACCTCCACCT CCCCTCCCTT AAATCCCTCC TCTCCCCGCC CCACCTCCCT 
    CCCCATCCAC ACCGCAAGCA AGATTCCCAA GAGAACCATC CATCATCTTG 
    GAATCCAAGA ATCGCCCGCC AAGAACAGCC AAGAACCGGA GGATTTCCGC 
    GAGGGAGGGA GCTCCAGGAC CCTATCAATC GGGGATTCGG TGAGGGGGGA 
    GGAGGAGGCG GGCGAGATGG TGAGGCTGCC GTACACCACG GCGCTGACGA 
    CGCTCTTCAG CTACGGGCTG CTCTTCGCGT TCGGCCAGCT CAGGGATTTC 
    TTCCGCAAGC TCATCGATTG GTTCAAGGCC AAGAACGTCA AGGGCTACGC 
    GCCGATCTGC CTCGGCCTGG AGGATTTCTA CGTGCGCCGC CTGTACCTTC 
    GGATCCAGGA TTGCTTCGGT AGGCCCATAG CAAGTGCACC AGATGCTTGG 
    TTTGATGTTG TTGAGCGCTA CTCCAATGAC AGTAACAAGA CATTAAAGCG 
    TACTTCAAAT ACCACAAGAT GCCTCAACCT AGGATCCTAC AATTACCTTG 
    GATTTGCAGC AGCAGATGAG TACTGCACTC CACTTGTGAT CGAGTCTCTC 
    AAGAAATACT CACCCAGCAC CTGCAGTGTT CGCGTTGATG GCGGCACGAC 
    CAAACTTCAC ACTGAGTTGG AGGAGTTGGT TGCACGCTTT GTTGGAAAGC 
    CTGCTGCTAT CCTATTTGGC ATGGGTTATG TTACAAACTC GGCCATCATT 
    CCTTGCCTAG TAGGAAAGGG TGGGCTGATA ATTAGTGACT CACTGAACCA 
    TAACTCAATT GTCAATGGTG CAAGAGGATC CGGTGCAACC GTTCGGGTTT 
    TCCAGCATAA CTCCCCTGCT CATTTGGAAG AGGTCCTGAG AGAGCAGATA 
    GCTGGTGGTC AACCACGCAC ACACAGACCT TGGAAAAAGA TCATTGTCAT 
    TGTTGAGGGT ATCTACAGCA TGGAAGGCGA GCTGTGCAAA CTACCTGAGA 
    TCATAGCTGT ATGCAAGAAA TACAAGGCTT ACACTTATCT GGATGAGGCC 
    CATAGCATTG GCGCTGTTGG CCAGTCTGGT TGGGGTGTTT GTGAGCTCCT 
    TGGGGTTGAT CCAGCTGATG TGGACATAAT GATGGGCACT TTCACTAAGT 
    CATTTGGATC ATGTGGTGGA TATATTGCAG CATCGAAGGA GATAATTCAG 
    CACCTGAAGC TTAGCTGCCC AGCGCATATT TATGCTACCT CCATGTCACC 
    ACCAGCAGTA CAACAAGTTA TTTCAGCCAT TAAAGTGATC CTTGGAGAGG 
    ATGGCTCCAA CAGAGGTGCC CAGAAACTTG CACGCATCCG TGAGAACAGC 
    AATTTCTTTA GGTCAGAGCT CAAGAAGATG GGTTTTGAGG TTCTCGGAGA 
    CAATGACTCT CCAGTTATGC CAATAATGCT CTACAATCCA GCCAAAATTC 
    CAGCTTTTTC CAGGGAGTGC CTTAGACAAA AGGTTGCTGT TGTCACTGTG 
    GCATTCCCTG CCACACCTCT GCTCCTTGCA AGGGCGCGCA TCTGCATTTC 
    TGCTTCGCAC ACTAGGGAGG ACCTGATAAA AGCCCTTGAT GTTATCAGCA 
    GAGTTGGTGA TCTTGTGGGC ATCAAGTACT TCCCTGCGGA GCCGCCAAAG 
    ATTGCTGAAG CTGATCACGA TAAGCTGGAG TAAATGATGA ACTGGGTTGC 
    CCCATTGAAT GCTCAAGTTG CTGGAATCTT GTAAACAAGG CGCATGTTGT 
    TGATTGGTTT CATCGGTTTG ACTTGGGATT TTGTTGATAC CTGAGAATCC 
    AGAGCCTGTC TCATTAGCTG ACTACTGTTG GTTGTACAAT TTACACTTCT 
    AAAATGTGTA TAGCTGGTCG AAGTTTGATT GTTCTATTGT TAATCGATTT 
    TCTTCATGTA ATACTTGATA GACACAATAT AAATTAAATT TATGATAGAA 
    CATTTCTATT G

    Gene models with high sequence identity

    1. AT5G23670.2 [+] show detail - long chain base2
      E-value: 0; Score: 804.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aminotransferase, class-II, pyridoxal-phosphate binding site 0
    HMMPfam Aminotransferase, class I/II 3.6e-54
    HMMPanther SERINE PALMITOYLTRANSFERASE 2 2.9e-281
    HMMPanther CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANO 2.9e-281
    superfamily Pyridoxal phosphate-dependent transferase, major domain 8.8e-97
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.1e-76

    See the detailed result >

    AT5G23670.2

    Model type
    Protein coding
    Short Description
    long chain base2
    Curator Summary
    Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
    Computational Description
    long chain base2 (LCB2); CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 10446 Blast hits to 10416 proteins in 2172 species: Archae - 77; Bacteria - 7037; Metazoa - 738; Fungi - 589; Plants - 234; Viruses - 9; Other Eukaryotes - 1762 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR