K07924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07924

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07924

Determination of introduced cDNA(s)

  • J033088M02 - Rice Full-length cDNAs - Original: J033088M02

    full reading [+] show sequence

    Nucleotide sequence: J033088M02 - full reading 
    GGTCGCACCG CGCAAAACCC TAACCCAAAG GCAAGGGAGA AGAGGAGCGG 
    ACGCCATGGA TGCTTCTCCG TTGGCGAGCT CCGCACTTTC GTGGAGGCCT 
    GCAAGAAGGA CCCCTCCCTC CTCGCCGACC CCAACCTCGC CTTCTTCCGC 
    GACTACCTCG AGAGCCTGGG CGCCCACCTC CCCGCCGCCG CCTTCACCAA 
    GGCCACCCCC AAGCCCAAGC CGTCCTCCAT GGATGACATC GACGATGAAT 
    ACGACGACGA CGACGACGAC GATCTCAACA TGAGGGATGC CACTCCGGAG 
    CCGGACGAGC TTGACCAGGA CATCGTCGAG TCCGATCTTG AACTTGAAGG 
    AGACATTGTC GAATCTGACC ATCAGGACCC TCCGCAAAAG ATGGGAGATC 
    CTTCTATTGA TGTCACCGAG GAAAATCGTG ATGCCTCACA GGAGGCCAAA 
    AGCAAGGCCA TGGAAGCAAT GTCAGAAGGG AAACTGGAAG AAGCTATTGA 
    CCATCTTACA AAGGCAATAC TGCTCAATCC ACTCTCAGCT ATCATGTATG 
    GTACTAGAGC TTCTGTGTTT ATCAAAATGA AGAAACCTGT TGCTGCCATC 
    CGTGATGCAA ATGCTGCTCT AGAGATTAAC CCAGACTCTG CAAAAGGCTA 
    CAAAACTCGT GGAATGGCTT ATGCTATGCT TGGAAAATGG GAGGAAGCTG 
    CCCATGATCT TCACACAGCA TCGAACATGG ATTATGATGA TGAGATCAAT 
    GCTGTGCTCA AGAAGGTGGA GCCTAATGCA CACAAGATAA TGGAACATCG 
    CAGGAAATAT GAACGGCTGC GAAAAGAGAG GGAAGAAAAG AGAGCTGAGC 
    GTGACCGATT CCATCGACGT GCAGAAGCAC AGGCTGCTTA TGACAAGGCC 
    AAGCGGAAGG AGCAATCATC AAGTCGCTCA TCGGGAGGTG CATCTCCCAG 
    GGGGGGCTTC CCAGGAGGGA TGCCTGGTGG AGGTTTCCCA GGAGGAATGC 
    CTGGTGGAGG TTTCCCAGGT GGTATGCCTG GTGGAGGTTT CCCAGGTGGG 
    ATGCCTGGTG GCTTCCCTGG GGGTGCTATG CCTGGAGGTG TTCCTGGGAA 
    TGTCGATATG AGTAAAATTC TGAATGACCC TGATCTGATG GCAGCATTTG 
    GTGACCCTGA GGTTATGGCA GCTCTTCAAG ATGTGATGAA CAATCCTGCC 
    AGCTTTGCGA GGCACCAAGC CAACCCCAAG GTGGGCCCCA TCATTGCAAA 
    GATGATGGCG AAATTCAATG GGTCCCAGTA AACGTTTTGA GTGAGCTGAT 
    GGTATGAGTA AATTGTTATT TGGCAATATG GTGTCAAGTG TTTTGTGATG 
    AGCAAAAGCA CGTTGGACGG TCTCTTGTTA GGTGCTACTC TTTTTTGTGA 
    ATGTGGTATT AAACGGTGGA TGTATATGCA GAAATACTTT TCATCGGGCT 
    GCTAACTCTA TATTACTTCT TTTAGAGGTG CGACAATGAG GATTTGGAGA 
    TATGATTTGT TGACAGTTGT CGCATTCATT CATC

    Gene models with high sequence identity

    1. AT4G22670.1 [+] show detail - HSP70-interacting protein 1
      E-value: 8e-82; Score: 301.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Tetratricopeptide repeat-containing 18.49
    Coil coiled-coil 0
    HMMSmart Tetratricopeptide repeat 2.9
    HMMSmart Tetratricopeptide repeat 0.13
    HMMSmart Tetratricopeptide repeat 0.052
    HMMSmart Heat shock chaperonin-binding 0.00000058
    superfamily TPR-like 9e-23
    HMMPanther HSC70-INTERACTING PROTEIN 3.1e-132
    HMMPanther TPR REPEAT CONTAINING PROTEIN 3.1e-132
    Gene3D Tetratricopeptide-like helical 7e-25

    See the detailed result >

    AT4G22670.1

    Model type
    Protein coding
    Short Description
    HSP70-interacting protein 1
    Computational Description
    HSP70-interacting protein 1 (HIP1); FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetraticopeptide domain-containing thioredoxin (TAIR:AT3G17880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR