K07933

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07933

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07933

Determination of introduced cDNA(s)

  • J023135C15 - Rice Full-length cDNAs - Original: J023135C15

    full reading [+] show sequence

    Nucleotide sequence: J023135C15 - full reading 
    GTAAGGGAAT CTCTCCTCTT CTCTTCTCTT CTCGCGCCGC CGCCGTGTCC 
    AGTGCCCAAG ATGTGGGGCA GCGCCGACGG CGGCACGCCG GAGGTCACCC 
    TGGAGACATC CATGGGCGCC TTCACCATCG AGATGTACTA CAAGCACGCG 
    CCCAAGACCT GCAGGAACTT CCTCGAGCTC TCGCGCCGCG GCTACTACGA 
    CAACGTCATC TTCCATCGCA TCATCAAGGA TTTCATCGTG CAAGGTGGGG 
    ATCCTACTGG CACCGGAAGA GGCGGCGAAT CCATCTACGG AGCAAAGTTC 
    GAGGATGAGA TTAGGCCAGA ACTGAAGCAC ACCGGCGCTG GAATTCTGTC 
    GATGGCCAAC GCTGGTCCAA ATACAAATGG AAGCCAGTTC TTTATTACTC 
    TTGCGCCTTG TCAGTCACTT GATGGAAAGC ATACAATTTT TGGGAGAGTA 
    TCAAAAGGAA TGGAAATTGT CAAGCGCCTT GGAAGTGTCC AGACAGACAA 
    AAGTGATAGG CCCATCCATG AAGTGAAAAT CCTGCGGACT GTGGTCGAAG 
    ATTGAGGCAC AGCGGGTCTA CTCGGTGTCA CTCATGACTT CTGGTATTTG 
    GAGTTGTAGC TGCTGTCAGT TTCAGGAATT GTTTCCTGCT TGTTCCGTGC 
    TTATGCAGTG GTGTATCGTT TCGGATGGGC TAGTTTAGTT ATTAACAACT 
    CATGAATCGT GATCCGTCTT AATTATTCTC ACCTGAACGA GTAGTGTTCA 
    GTGATTATCA GTGGAAATAA CTTTCGAAAT ATATGAAGTC ATTTTGAGCG 
    C

    Gene models with high sequence identity

    1. AT2G36130.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 8e-70; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 34.091
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.9e-51
    superfamily Cyclophilin-like 2.7e-62
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9.7e-32
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9.7e-32
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9.7e-32
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9.7e-32
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9.7e-32
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.1e-57
    HMMPanther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1, P 2.5e-117
    HMMPanther CYCLOPHILIN 2.5e-117

    See the detailed result >

    AT2G36130.1

    Model type
    Protein coding
    Short Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin71 (TAIR:AT3G44600.1); Has 17839 Blast hits to 17712 proteins in 2717 species: Archae - 108; Bacteria - 7579; Metazoa - 2864; Fungi - 1418; Plants - 1272; Viruses - 0; Other Eukaryotes - 4598 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR