K07944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07944

Determination of introduced cDNA(s)

  • J033048B22 - Rice Full-length cDNAs - Original: J033048B22

    full reading [+] show sequence

    Nucleotide sequence: J033048B22 - full reading
    GGAACCCCCT CTCTCCCATC GCCGCCGCCG CCGCCGCCGA CACAGCCGCT 
    GACCTCGCCG CCGCCGACGC CGATGGAGAT GGCCGCCCCC GTCTCCCCCG
    CGCCGCGCAC CGTCGAGGAC ATCTTCAAGG ACTTCTCCGG CCGCCGCGCC
    GGCCTCGTCC GCGCCCTCAC CGTCGATGTG GATGAGTTCT ACGGATTCTG
    CGACCCAGAG AAGGAGAATT TGTGCCTGTA CGGGCACCGG AACGGGCGGT
    GGGAGGTGGC GCTGCCGGCG GAGGAGGTGC CGCCGGAGCT GCCGGAGCCG
    GCGCTCGGGA TCAACTTCGC CAGGGACGGG ATGCACCGCC GCGACTGGCT
    CTCGCTCGTC GCCGTCCACT CCGACTCGTG GCTGCTCTCC GTCGCCTTCT
    TCTTCGGCGC GCGCCTCAAC GGCAACGAGA GGAAGCGCTT ATTCAGCTTG
    ATCAATGACC ATCCAACCGT GCTTGAAGCA CTGTCTGATA GGAAGCATGG
    AAGGGATAAT AAATCTGGTG CCGACAATGG CAGCAAATCC AGGCACTCAG
    GAAAGCGAGC AAATGACGTG CAGACAAAAA CCTCGAGGCC AGCAGTTGTT
    GACGATGGGT ACGATGAAGA AGAACACAGT GAAACCCTAT GTGGAACCTG
    CGGTGGCCGC TACAACGCCA ACGAGTTTTG GATTGGGTGC GACATTTGCG
    AGCGGTGGTT CCACGGCAAA TGCGTTAGGA TAACACCAGC GAAAGCGGAA
    CACATAAAGC ACTACAAGTG CCCTGATTGC AGCAGCTCCA AGAAGAGTAG
    GCAATAAAAA CCATGGAGCT GCTGCTGTGG CTCTCTACTG CTGACTAAGC
    TGATCAATCA AATGATACTT GCCATCCCTC TTCCAGTCCC AAGTTGGCGG
    CAGATGTGAA GAATTTGCTC TAGAACATTG CGCACTGTTG TGGTAGATGC
    TGGAAAACAA AAAAGAAGAA ACTTTACAGG ATAGTTTGTT TCATAAACTG
    GTCGGTTACT GTTGTGGTTG TTCATTTGAG ATATGGATAC TGTTACATTG
    TAGCCTTTAG AGGAAATTTG TTCATGCCTT GTTTCTAATT TGGTATGTCC
    TTCCCTTGCT GCATGACATT GATTTCTCTC TACAAGTTTC TGTCTGTCAC
    TGTGC

    Gene models with high sequence identity

    1. AT3G11200.1 [+] show detail - alfin-like 2
      E-value: 2e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 1.6e-11
    HMMSmart Zinc finger, PHD-type 2.1e-09
    PatternScan Zinc finger, PHD-type, conserved site 0
    superfamily Zinc finger, FYVE/PHD-type 2.3e-12
    HMMPfam Protein of unknown function DUF3594 2.9e-70
    HMMPfam Zinc finger, PHD-finger 3.3e-10
    Gene3D no description 6e-16
    ProfileScan Zinc finger, PHD-finger 9.25

    See the detailed result >

    AT3G11200.1

    Model type
    Protein coding
    Short Description
    alfin-like 2
    Curator Summary
    AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013033A11 - Rice Full-length cDNAs - Original: J013033A11

    full reading [+] show sequence

    Nucleotide sequence: J013033A11 - full reading
    GACGGAGCTC GAGCAACAAC CACCCACGCA CATCAAGGAG TCATCTCACC 
    ACTCAACGAC AGCCTCGCAC AAGAGCAGGG AGGAATTTTC GGTTGTTCCT
    CGTCCCAAGG ATCAATAGAT GGAGAAGGCA GCGTGCAACG AGCATGTGAT
    CGGGATCCCA GTGAGCAACA GGGCTTTCGG CATCGAGGAG CCGGATTTCC
    CAAGCGAAGG AGCAGCCGCC TACCACGCCG AGGCGAAAAG CTCTGCAACC
    GCGCGTACGA GCTCCAGATT TGGCAGGACA GGGGACAGGC TCGCTCAAGG
    CATCAAAGAA CATGTGACTC TAGGACCAAA ACTGTACGAG ACCATGAAAG
    GCAAGCTGAC GCTGGGCGCG AGAATCCTCC AGGCAGGCGG CGTGGAGAAG
    GTCTTCCGCC GGTGGTTCGC CGTCGGCAAG GGCGAGAAGC TCCTGAGGGC
    CTCCCAGTGC TACCTGTCCA CCACGGCCGG CCCGATCGCC GGCATGCTCT
    TCATATCGAC GGAGAGGATC GCGTTCCGGA GCGACCGGTC GCTGGCGCTG
    ACCACCCCGA GCGGCGACAC GGTGCGTGTG CCGTACAAGG TGGCCATCCC
    TCTGAGGAGG GTGAAGACGG CCAAGCCGAG CGAGAACAAG CACCGGCCGG
    AGCAGAAGTA CGTCCAGGTG GTGACCGACG ACGGCTTCGA GTTCTGGTTC
    ATGGGATTCG TCAGCTTCCA GGTGACCCTG AAGAACCTGG AGCTGGCCGT
    CGCGCAGGCG CAGTGATCGA TCGATCTCTG ATGAAACAAA CGTCGAAGTT
    GGGTCGTCGG TTTCTTGGTC GTGTGCCTTG TGTGTGGTCT GGTTAATCTG
    TTGTGCATAT GTGGTAGCGT CGTAGGTGTT TGTGGTGGAT TGCTTGGCGT
    TTTTGGCTTT GGAGCAAGTC CGGTACACAT GGTAGGAGAA ATTTTAGTGC
    ATCAAATTTC TTGATTGGTG TTGGAGAAAA TAGTGCCACG GCAAAAGTGC
    CATCATATAC ATGTGGTATG TACAAGATCA ATGAGAAATC CAAAAATGTT
    TGTTCAACAC TACATACTAC AGC

    Gene models with high sequence identity

    1. AT5G08350.1 [+] show detail - GRAM domain-containing protein / ABA-responsive protein-related
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart GRAM 2.3e-10
    HMMPfam GRAM 4e-12

    See the detailed result >

    AT5G08350.1

    Model type
    Protein coding
    Short Description
    GRAM domain-containing protein / ABA-responsive protein-related
    Computational Description
    GRAM domain-containing protein / ABA-responsive protein-related; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23370.1); Has 358 Blast hits to 358 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR