K07944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07944

Determination of introduced cDNA(s)

J033048B22 - Rice Full-length cDNAs - Original: J033048B22

full reading [+] show sequence

GGAACCCCCT CTCTCCCATC GCCGCCGCCG CCGCCGCCGA CACAGCCGCT 
GACCTCGCCG CCGCCGACGC CGATGGAGAT GGCCGCCCCC GTCTCCCCCG 
CGCCGCGCAC CGTCGAGGAC ATCTTCAAGG ACTTCTCCGG CCGCCGCGCC 
GGCCTCGTCC GCGCCCTCAC CGTCGATGTG GATGAGTTCT ACGGATTCTG 
CGACCCAGAG AAGGAGAATT TGTGCCTGTA CGGGCACCGG AACGGGCGGT 
GGGAGGTGGC GCTGCCGGCG GAGGAGGTGC CGCCGGAGCT GCCGGAGCCG 
GCGCTCGGGA TCAACTTCGC CAGGGACGGG ATGCACCGCC GCGACTGGCT 
CTCGCTCGTC GCCGTCCACT CCGACTCGTG GCTGCTCTCC GTCGCCTTCT 
TCTTCGGCGC GCGCCTCAAC GGCAACGAGA GGAAGCGCTT ATTCAGCTTG 
ATCAATGACC ATCCAACCGT GCTTGAAGCA CTGTCTGATA GGAAGCATGG 
AAGGGATAAT AAATCTGGTG CCGACAATGG CAGCAAATCC AGGCACTCAG 
GAAAGCGAGC AAATGACGTG CAGACAAAAA CCTCGAGGCC AGCAGTTGTT 
GACGATGGGT ACGATGAAGA AGAACACAGT GAAACCCTAT GTGGAACCTG 
CGGTGGCCGC TACAACGCCA ACGAGTTTTG GATTGGGTGC GACATTTGCG 
AGCGGTGGTT CCACGGCAAA TGCGTTAGGA TAACACCAGC GAAAGCGGAA 
CACATAAAGC ACTACAAGTG CCCTGATTGC AGCAGCTCCA AGAAGAGTAG 
GCAATAAAAA CCATGGAGCT GCTGCTGTGG CTCTCTACTG CTGACTAAGC 
TGATCAATCA AATGATACTT GCCATCCCTC TTCCAGTCCC AAGTTGGCGG 
CAGATGTGAA GAATTTGCTC TAGAACATTG CGCACTGTTG TGGTAGATGC 
TGGAAAACAA AAAAGAAGAA ACTTTACAGG ATAGTTTGTT TCATAAACTG 
GTCGGTTACT GTTGTGGTTG TTCATTTGAG ATATGGATAC TGTTACATTG 
TAGCCTTTAG AGGAAATTTG TTCATGCCTT GTTTCTAATT TGGTATGTCC 
TTCCCTTGCT GCATGACATT GATTTCTCTC TACAAGTTTC TGTCTGTCAC 
TGTGC

Gene models with high sequence identity

AT3G11200.1 [+] show detail - alfin-like 2
E-value: 2e-87; Score: 319.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PHD/F-BOX CONTAINING PROTEIN	1.6e-11
HMMSmart	Zinc finger, PHD-type	2.1e-09
PatternScan	Zinc finger, PHD-type, conserved site	0
superfamily	Zinc finger, FYVE/PHD-type	2.3e-12
HMMPfam	Protein of unknown function DUF3594	2.9e-70
HMMPfam	Zinc finger, PHD-finger	3.3e-10
Gene3D	no description	6e-16
ProfileScan	Zinc finger, PHD-finger	9.25

See the detailed result >

AT3G11200.1

Model type: Protein coding
Short Description: alfin-like 2
Curator Summary: AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description: alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013033A11 - Rice Full-length cDNAs - Original: J013033A11

full reading [+] show sequence

GACGGAGCTC GAGCAACAAC CACCCACGCA CATCAAGGAG TCATCTCACC 
ACTCAACGAC AGCCTCGCAC AAGAGCAGGG AGGAATTTTC GGTTGTTCCT 
CGTCCCAAGG ATCAATAGAT GGAGAAGGCA GCGTGCAACG AGCATGTGAT 
CGGGATCCCA GTGAGCAACA GGGCTTTCGG CATCGAGGAG CCGGATTTCC 
CAAGCGAAGG AGCAGCCGCC TACCACGCCG AGGCGAAAAG CTCTGCAACC 
GCGCGTACGA GCTCCAGATT TGGCAGGACA GGGGACAGGC TCGCTCAAGG 
CATCAAAGAA CATGTGACTC TAGGACCAAA ACTGTACGAG ACCATGAAAG 
GCAAGCTGAC GCTGGGCGCG AGAATCCTCC AGGCAGGCGG CGTGGAGAAG 
GTCTTCCGCC GGTGGTTCGC CGTCGGCAAG GGCGAGAAGC TCCTGAGGGC 
CTCCCAGTGC TACCTGTCCA CCACGGCCGG CCCGATCGCC GGCATGCTCT 
TCATATCGAC GGAGAGGATC GCGTTCCGGA GCGACCGGTC GCTGGCGCTG 
ACCACCCCGA GCGGCGACAC GGTGCGTGTG CCGTACAAGG TGGCCATCCC 
TCTGAGGAGG GTGAAGACGG CCAAGCCGAG CGAGAACAAG CACCGGCCGG 
AGCAGAAGTA CGTCCAGGTG GTGACCGACG ACGGCTTCGA GTTCTGGTTC 
ATGGGATTCG TCAGCTTCCA GGTGACCCTG AAGAACCTGG AGCTGGCCGT 
CGCGCAGGCG CAGTGATCGA TCGATCTCTG ATGAAACAAA CGTCGAAGTT 
GGGTCGTCGG TTTCTTGGTC GTGTGCCTTG TGTGTGGTCT GGTTAATCTG 
TTGTGCATAT GTGGTAGCGT CGTAGGTGTT TGTGGTGGAT TGCTTGGCGT 
TTTTGGCTTT GGAGCAAGTC CGGTACACAT GGTAGGAGAA ATTTTAGTGC 
ATCAAATTTC TTGATTGGTG TTGGAGAAAA TAGTGCCACG GCAAAAGTGC 
CATCATATAC ATGTGGTATG TACAAGATCA ATGAGAAATC CAAAAATGTT 
TGTTCAACAC TACATACTAC AGC

Gene models with high sequence identity

AT5G08350.1 [+] show detail - GRAM domain-containing protein / ABA-responsive protein-related
E-value: 1e-45; Score: 181.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	GRAM	2.3e-10
HMMPfam	GRAM	4e-12

See the detailed result >

AT5G08350.1

Model type: Protein coding
Short Description: GRAM domain-containing protein / ABA-responsive protein-related
Computational Description: GRAM domain-containing protein / ABA-responsive protein-related; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23370.1); Has 358 Blast hits to 358 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR