K08051

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08051

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08051

Determination of introduced cDNA(s)

  • J013153F20 - Rice Full-length cDNAs - Original: J013153F20

    full reading [+] show sequence

    Nucleotide sequence: J013153F20 - full reading 
    GAGGTCATCG TCGTCGCCTC GCCTCGCCTC GCCTTCCCCC GCGTGGCCTC 
    GCCGTCGGAT CGAGCCACGC CGCCGCCGCC GCCGCGTCGC GGATCCCCAC 
    GCTCGCCGAG AGGAGGAGGA GGTGATGCCG CTTCCCGCTT GCCCCCACCC 
    TCTCCTCTCG TCTCGCGGTT GCTTGGGTGC TTGTATGCTG GGTTTGTGCG 
    ATTCGGATTT GGGTTCGGGG CCGGTGGTCG ATTCGGAGGG GGCACTGGCC 
    GATTCAGGCG TAGATTTGGT TTGTTTGTTT ATGGCGATCT GTTGTTTGCT 
    AGTTGTTCAT ACGCGGGTTG GTTTTCCTAG AGAATTGGGA TTTTTTTTAA 
    TTGTTCTGCG ATTACGGTAG AAATAGATCG GGCTTATGGA TAATCCCGTC 
    TTCTTCTAGC GTGTGATTTT ATCCTCCAAC GTGGGAGATA TTCCTAGATG 
    TTTTATTTCC TTGTGTTGTT TATTTATGCT TAGATTGTTG ATTCCATCCT 
    TGTGGATCGT CAGCATCTTA TTCTAGATGA TCCTATATAA TTGTGTGAAA 
    CAAAATTGAG GTTGTTGGGA GGGTTTCTGA TCATCAGCTG TCCTCTTTAC 
    CGGCACGAAT TTGGGGAATC TTTCTTGGTT GTGTTCTTGT TGGCTTATAC 
    CTTTTTTATG TTTTGCTCAA ACTCATGAGA TTTTTATCGT TTAATGCTGG 
    ATCCTTATGT ATGACCACAT GCTAGTAGCT GGCGGAGCAA CTTCGTAATT 
    GTTGCTAGTA GCCATTATAT TACATAGTAC TCCTAATATA TTCTATCAGT 
    TTTGCATAGC TATTTCTAGC ATTGTTGGTG ATTGTAGTTT CATTGGCAAT 
    TGCAGCTTCT TGCACTTTGA AGTAACAGCA AGATGGCAGC CAATGTTGGG 
    GAATCTACAA GCAGCGGCAC CAATGGCGAT GCAGCTGGGG GGAGCTTTGA 
    ATGCAATATC TGCTTTGAAT TGCCACAAGA ACCAATAGTT ACTCTCTGTG 
    GCCACCTCTT CTGCTGGCCA TGTATTTACA GGTGGTTGCA CATCCACGCA 
    CACTCTCCAG AGTGCCCGGT GTGCAAAGCT GTCGTTGAAG AGGATAAGCT 
    CGTTCCCCTT TATGGGCGTG GCAAGGACCG CGTCGATCCA AGGTCAAAGA 
    ACATACCCGA GGCTGACATT CCTAACCGCC CAACTGGCCA GAGGCCTGCC 
    ACAGCTCCAC AGGCCGATCC TAACAACAAT TTTGCCCATG CCAATCCTAA 
    TGCTAATGCC AATCCATGGT TCATGGGCAC TGGAGTACCA TTGGCTAATG 
    CACGGTGGGG GAATTATGCA TTCTCAGCTG CGTTTGGAGG CCTATTCCCT 
    ATGCTTAGCT TCCAAGTGCA TGGATTTCCA GATGCAAATC CTTATGCACA 
    GCCTGCTGGG TTTCACTATG GGTATGGCCA TGGTCATGGA TTCCATGGCG 
    GACATATGGG TCATGCCGCC CACGGTGTCC CTCGACAAGG ACCACTGGAG 
    CAACCGCAGC AGGCAGACAT CTACCTGAAG GCCCTGCTAA TCATGGTTGG 
    ATTTCTTGTG GTTGCAAGCC TTCTTGCATT TTAAGATTGT TAACAGATTC 
    ACCTGGTGAT AGAAGATGGT AAAAGAATTG CCAGCATATC CCTGTGGCGT 
    TGTGGTGCGT GCAGTTTCTT CCTGCCAAAT GTGGCATAAG TTATTTTGCG 
    TATTTACATG AAGTGTTCAT AGAATATTTG CATGTAGATG TAGGATAAGC 
    ATCTGGCTTT TTATAGCCTC ATATGTAGTA CTATAATTAG GAGGAGCCAT 
    TTTATTTTCT TTTCTTTTTT TAGTTTTGAC TGTTTTGATG GATATGATGT 
    ACAATTATTG GGATGTTGTC TCCATGTGTT GTATACATGT AAGAATAGTT 
    CTTCCC

    Gene models with high sequence identity

    1. AT2G23780.1 [+] show detail - RING/U-box superfamily protein
      E-value: 5e-50; Score: 196.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 3.6e-06
    ProfileScan Zinc finger, RING-type 13.286
    Gene3D no description 3.5e-15
    HMMPanther RNF5 4.6e-47
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMSmart Zinc finger, RING-type 1.1e-07
    superfamily RING/U-box 1e-19

    See the detailed result >

    AT2G23780.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19310.1); Has 3846 Blast hits to 3838 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2175; Fungi - 493; Plants - 714; Viruses - 21; Other Eukaryotes - 443 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR