K08113

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08113

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08113

Determination of introduced cDNA(s)

J023009I10 - Rice Full-length cDNAs - Original: J023009I10

full reading [+] show sequence

GGAGGAGTAT ATACAAATAC CAATCCACCC CTCCTCTCCT CCTCCTCCTT 
TTTCCTCCCC CTTCCGAAAC GACGAAAAGC AACCGCCGAG GCGGAAGCGG 
GGAGAGGAGA ATTCGCCGCC GCCGCCCCCC GATCGGTGGA AGAACAACTA 
ACAACTAGAT TGATCCATCC CTGCGCCGCC GCCTCCGCCT GCCGTGGGGG 
CTCTCTCCGC TGTGGATGAT AGGGAGGCTC GACGATGGGA GGGAAGAAGG 
CCAAGACGGT TGAGAGGAAT GACCACCGCC TGCTCTGCAG TGACGTGCTC 
ACGGAGGTCT TCCACAGGCT GCCGGCGCGC ACCCTCGCGT CGTGCAGGCT 
TGTCTGCAAG TCATGGATGT CGGAGCTCAC CGATCCCCAT TTCGTCCACG 
AGCACCTCAA GAGGAGCCAG CAGAAGCTCC TGCTCTTTGC GAACGACAAG 
GCGAACGATA GGTCCCTCGC GATGGTGCTC GCCGACGACA CGGGGGCTAC 
CTACCAGCTG ACCAGGCCCA TGGCTTCGAG GAGCCTCTTT GTGCACAATT 
CTTGCAATGG CCTGCTCTGC CTAGGTGACA GCACAGGAGC CGTGCAGTTG 
CTCAACCCGA CGACCGGCGA ATCGGCTACT CTGCCGATGC CGATGTATAC 
CGCAGGGAGC AGCCAGTTCT CGTCGTGTAA TTGGCACTGC TTGGGGTTTT 
GCCCGTCTAC GAAGGAGCAC AAAGTGGTAC ATTTCTACCT GGGAGCTCAT 
TTTGATTCTT TCAATGTGTG CTGCGAGATA TTCACTATTG GAGATAAATC 
CTGGAGACAG ATTGGGAGTT TCCATGGAGC ACCGACAGAT AGAGGGGTGC 
ATGTGAATGG AGCAGTGTAC TATCTGACAA AGTTCCGTTA CATTGCTTCG 
TCACGTATCA ATTGTTTGAA TCTTGAGAGC GAAAATTTTG ATGTGATGAT 
GCTTCCCCCA CGCAAGTCGT ATGGAGGGCA TTGCTCTTTG GCGGAGCTTG 
AGGGAAAGCT ATGCTTGCTA GTTGTGGAGG GTGGACATGA TAATCCACCT 
CGTACAATGG ACATATTGAT GCTTGATAGT GGTGATAAGA CAACCTGGAC 
GCACAGATAC CACATCTCAT TGCCATGGTT GATGCCTTCA TGTTATTTTA 
CTCCAAAACA CACTTTGTTC CATGAGGGAA AAATTTGGGT TCAGTTGTTG 
GCTCGGAACC TCTACTGTTA TGATCCAAGT TCAAGCTCCA CTGAACTGAA 
GATGGCATGT CCAGAATCTG AGTTTCCTTT TAGCACACGT ACTTTCATTG 
AAAGCATAGT TCCTCTGCGC AAAGATTACT TCATCAAGCA GATACAGTGA 
TAATGGTGTT CATCACTTGT TTTCCAGATG TTCCGCAGTT CACAGAATTA 
CAAAATTGTG CCCCTTTTTC CTTTTCCGTT GATGAATTTT AGCTGGTCAA 
TGACTTAGAG TGGCCTATTT TACCGTGAAT TGTAATTAGC TAAAATAAAT 
GCAGTATTGA AACCTCCTTA CAGC

Gene models with high sequence identity

AT4G21240.1 [+] show detail - F-box and associated interaction domains-containing protein
E-value: 4e-14; Score: 76.60

InterPro Scan Digest

Program	Description	E-value
HMMPfam	F-box associated domain, type 3	1.5e-07
HMMPfam	F-box domain, cyclin-like	2.9e-06
superfamily	F-box domain, Skp2-like	1.9e-11
HMMSmart	F-box domain, cyclin-like	0.0016
HMMTigr	F-box associated interaction domain	9.4e-10

See the detailed result >

AT4G21240.1

Model type: Protein coding
Short Description: F-box and associated interaction domains-containing protein
Computational Description: F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G47790.1); Has 1718 Blast hits to 1677 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1718; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR