K08115

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08115

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08115

Determination of introduced cDNA(s)

  • J023122F24 - Rice Full-length cDNAs - Original: J023122F24

    full reading [+] show sequence

    Nucleotide sequence: J023122F24 - full reading 
    GATTTGGGAC ACGTGTACAT AACTCTTTCG GTCCGGGACC CTCTCTTGTT 
    TTTCTTCGTT GCTCGCGAGC TCTTCCCCCC TCGCCTCGCC TCCCCACCCA 
    ACAAGCCCGC GGCGGCGACT AGGGTTTTGA CCCCCCGGAA TCCCCCCTCC 
    TCTCGCCGCC TCCGCCTCCG CCGCCGCCGC CTTCCTCCCC GCGCCGGCGA 
    CGATCTGCTC CTCCTCCCCC GCCGGCATCG CTGTTTCCGG ATCTAGCGCA 
    AGATGCTTCC GCTCTCGCTC CTCAAGACCG CCCAGGGGCA TCCCATGCTC 
    GTGGAGCTTA AGAACGGCGA GACGTACAAC GGGCACTTGG TGAACTGCGA 
    CACGTGGATG AACATCCACC TCCGGGAGGT TATTTGCACC TCAAAGGATG 
    GTGATAAGTT TTGGAGGATG CCAGAATGTT ACATCCGTGG GAACACCATC 
    AAGTATCTTC GGGTTCCTGA TGAGGTGATT GACAAGGTCC AGGAAGAGAC 
    TTCAAAGAGC AGATCAGATA GGAGGCCACC AGGTGTAGGC CGCGGAAGAG 
    GAAGAGGTGA TATAGGTACT AAGCCTGGAG GCAGAGGCAT TGGGCGTGGC 
    CAGGATGATG GTGGCAGCAA AGGCGGTGGT GGCCGTGGAA GGGGAGGAAT 
    TGGAGGTAAA GGTGGCATCA AAGGTGGGGG CCGCGGACGT GGGTGAGAGG 
    GAAGGTCACT TGTGGGAATG CCGCTTTTTT AAGGCTTTGT GTCACATAGA 
    TTGCTTTAGG AGGGTGAAGA ATGGACTGGT GGAGTAAGCA TTGCTTTGCT 
    TTATCATTTT GTGGTATGAC CGAAAAATGT TTCATGGGTT CAGTAGTTAC 
    CAGTGAAGAG GCAGCGGTTG GCCTGTCTCG AAACAATTTG TTTGATGTCT 
    GGACCCTCGA CTATATTGAA TATTATTGTG GTTATTACTT TGACCTGTTC 
    ATCGC

    Gene models with high sequence identity

    1. AT5G27720.1 [+] show detail - Small nuclear ribonucleoprotein family protein
      E-value: 9e-45; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Like-Sm ribonucleoprotein (LSM)-related domain 3.3e-37
    HMMPanther U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4 1.3e-91
    HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1.3e-91
    Gene3D no description 3.1e-23
    HMMPfam Like-Sm ribonucleoprotein (LSM) domain 9.3e-16
    HMMSmart Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type 7.6e-21

    See the detailed result >

    AT5G27720.1

    Model type
    Protein coding
    Short Description
    Small nuclear ribonucleoprotein family protein
    Computational Description
    embryo defective 1644 (emb1644); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR