K08120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08120

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08120

Determination of introduced cDNA(s)

  • J033148E16 - Rice Full-length cDNAs - Original: J033148E16

    full reading [+] show sequence

    Nucleotide sequence: J033148E16 - full reading 
    GAGAGAGCAG CAGCGAGAGA CGAACAAAAA ACAGAATCCA TCGCCATAAT 
    CGAAGGTTCG CTCTTGCTTC CACCCCGCAA TCCACATGGA GAACGAATTC 
    CAGGATGGTA AGACGGAGGT GATAGAAGCA TGGTACATGG ATGATAGCGA 
    AGAGGACCAG AGGCTTCCTC ATCACCGCGA ACCCAAAGAA TTCATTCATG 
    TTGATAAGCT TACAGAACTA GGAGTAATCA GCTGGCGCCT AAATCCTGAT 
    AACTGGGAGA ATTGCGAGAA CCTGAAGAGA ATCCGCGAAG CCAGAGGTTA 
    CTCTTATGTG GACATTTGTG ATGTGTGCCC AGAGAAGCTG CCAAATTATG 
    AAACTAAGAT CAAGAGTTTC TTTGAAGAAC ACCTGCATAC CGATGAAGAA 
    ATACGCTATT GTCTTGAAGG GAGTGGATAC TTTGATGTGA GAGACCAAAA 
    TGATCAGTGG ATTCGTATAG CACTGAAGAA AGGAGGCATG ATTGTTCTGC 
    CTGCAGGGAT GTACCACCGC TTTACGTTGG ACACCGACAA CTATATCAAG 
    GCAATGCGAC TGTTTGTTGG CGATCCTGTT TGGACACCCT ACAACCGTCC 
    CCATGACCAT CTTCCTGCAA GAAAGGAGTT TTTGGCTAAA CTTCTCAAGT 
    CAGAAGGTGA AAATCAAGCA GTTGAAGGCT TCTGAGGGTT TTGTTGGGCT 
    CCTGCACTGC GGTTCTATAT TCAACCTGAA TAAGATGTGC TATAGCAATG 
    TAAATTTAGC ACAGTGGCTA TGGTCGCCAC TCACCAACTT GAAGTGAAAG 
    ATTTAATGAT TTTTGTTAAT TCTTATGTAT CAATCGGCAT ATAGCATTTC 
    CGAAATGTGT TTTCAATAAA CAGAAAGTAA GAGTCATGAA GCTGAAAATG 
    AACAAAATTT CTC

    Gene models with high sequence identity

    1. AT4G14710.2 [+] show detail - RmlC-like cupins superfamily protein
      E-value: 3e-89; Score: 325.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D RmlC-like jelly roll fold 6.8e-72
    HMMPanther Acireductone dioxygenase, ARD 6.6e-89
    HMMPfam Acireductone dioxygenase, ARD 7.9e-68
    superfamily Cupin, RmlC-type 2e-42

    See the detailed result >

    AT4G14710.2

    Model type
    Protein coding
    Short Description
    RmlC-like cupins superfamily protein
    Computational Description
    ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: oxidation reduction, L-methionine salvage from methylthioadenosine; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase 1 (TAIR:AT4G14716.1); Has 1544 Blast hits to 1537 proteins in 521 species: Archae - 0; Bacteria - 702; Metazoa - 158; Fungi - 135; Plants - 464; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR