K08128

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08128

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08128

Determination of introduced cDNA(s)

  • J033087H03 - Rice Full-length cDNAs - Original: J033087H03

    full reading [+] show sequence

    Nucleotide sequence: J033087H03 - full reading
    GATCGTGCTT GGTGGTTGCG TTGGTCTTCG TCTTCTCTCC TCCTCCTCAT 
    CTTCATCTTC TTCTCCCCAA TCGGCGGCGC CGCCGCGGAG GAATCGCGGA
    TTGCGTCATC TTCTCCTCCT CCTCCGCCTC CGCCTCCGCT TCCAATCCCC
    GTCGTCGTCG GGTCACCGGA GCCAAACCCT AGAGGCTAGA GGAAGAGGGA
    AGCCATGTTC GGGAAGGGGC ATGATCTCGA GGCCGGCGGC TCGTCGGAGC
    CGCTGTACCC GGGGATGGTG GAGAGCCCCG ACCTGAGGTG GGCGCTCATC
    CACAAGATCT ACGTCATCCT CTCCGTGCAG CTCGCGATGA CGGCGGCCGT
    GGCGGCCTTC GTCGTCAAGG TCCGCGGCGT CTCGGAGTTC TTCGTCTCCT
    CCAACGCCGG ATTCGCCCTC TACATCTTCC TCCTCTTCCT GCCCCTCATC
    GTGTTGTGCC CTCTGCGCTA CTACCACCAG AAGCATCCGG TGAACTTGCT
    GTTGCTCGGC CTCTTCACGG TTGCCATCAG CTTCGCCGTC GGCATGACAT
    GTGCCTACAC CAGCGGAAAA GTCATTTTTG AGGCGGCAGC TCTCACAGCA
    GTGGTGGTGA TCAGCTTGAC AGCATACACT TTCTGGGCTG CAAAGAGAGG
    CCATGACTTC AATTTCCTCG GCCCCTTCCT GTTTTCTGCT GTGATGGTGC
    TGATTTTATT TTCACTGATC CAGATATTCT TCCCATTGGG CAAGATCTCT
    GAAATGATAT ATGGCGGACT GGCATCGCTC GTCTTCTCTG GATACATCAT
    CTACGACACG GACAATATCA TCAAGCGCTA CACTTACGAT GAGTATGTCT
    GGGCTGCTGT CTCGCTCTAC CTCGACGTGA TCAACCTCTT CTTAGCTCTG
    CTGCGAGTGT TGAGGGCAGC TGATAACTAG TTCATCAAGG CTAGTCTCTA
    CCCTGCACAT AACGAATGTC CGTGGATTCC TGTACCCTGA TTAAGCATCA
    CGCTTTTGTT GATTCTGCTG TAAATTCTTG CTTAGTGGAT CCTGGAGACT
    TTTTATGGAA CCGCATAATT GAATTTGTTA GCTATATTTC AACAAATAAA
    TGCAATTGTT GCCTTGCTTC

    Gene models with high sequence identity

    1. AT3G63310.1 [+] show detail - Bax inhibitor-1 family protein
      E-value: 2e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Bax inhibitor-1-related 1.2e-54
    HMMPanther GLUTAMATE-/ASPARTATE-BINDING PEPTIDE-RELATED 1.9e-135
    HMMPanther Bax inhibitor-1-related 1.9e-135

    See the detailed result >

    AT3G63310.1

    Model type
    Protein coding
    Short Description
    Bax inhibitor-1 family protein
    Curator Summary
    Mediates cell elongation in brassinosteroid signaling.
    Computational Description
    BRZ-INSENSITIVE-LONG HYPOCOTYLS 4 (BIL4); CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT1G03070.2); Has 5145 Blast hits to 5145 proteins in 1455 species: Archae - 0; Bacteria - 2761; Metazoa - 841; Fungi - 142; Plants - 239; Viruses - 82; Other Eukaryotes - 1080 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR