K08128

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08128

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08128

Determination of introduced cDNA(s)

  • J033087H03 - Rice Full-length cDNAs - Original: J033087H03

    full reading [+] show sequence

    Nucleotide sequence: J033087H03 - full reading 
    GATCGTGCTT GGTGGTTGCG TTGGTCTTCG TCTTCTCTCC TCCTCCTCAT 
    CTTCATCTTC TTCTCCCCAA TCGGCGGCGC CGCCGCGGAG GAATCGCGGA 
    TTGCGTCATC TTCTCCTCCT CCTCCGCCTC CGCCTCCGCT TCCAATCCCC 
    GTCGTCGTCG GGTCACCGGA GCCAAACCCT AGAGGCTAGA GGAAGAGGGA 
    AGCCATGTTC GGGAAGGGGC ATGATCTCGA GGCCGGCGGC TCGTCGGAGC 
    CGCTGTACCC GGGGATGGTG GAGAGCCCCG ACCTGAGGTG GGCGCTCATC 
    CACAAGATCT ACGTCATCCT CTCCGTGCAG CTCGCGATGA CGGCGGCCGT 
    GGCGGCCTTC GTCGTCAAGG TCCGCGGCGT CTCGGAGTTC TTCGTCTCCT 
    CCAACGCCGG ATTCGCCCTC TACATCTTCC TCCTCTTCCT GCCCCTCATC 
    GTGTTGTGCC CTCTGCGCTA CTACCACCAG AAGCATCCGG TGAACTTGCT 
    GTTGCTCGGC CTCTTCACGG TTGCCATCAG CTTCGCCGTC GGCATGACAT 
    GTGCCTACAC CAGCGGAAAA GTCATTTTTG AGGCGGCAGC TCTCACAGCA 
    GTGGTGGTGA TCAGCTTGAC AGCATACACT TTCTGGGCTG CAAAGAGAGG 
    CCATGACTTC AATTTCCTCG GCCCCTTCCT GTTTTCTGCT GTGATGGTGC 
    TGATTTTATT TTCACTGATC CAGATATTCT TCCCATTGGG CAAGATCTCT 
    GAAATGATAT ATGGCGGACT GGCATCGCTC GTCTTCTCTG GATACATCAT 
    CTACGACACG GACAATATCA TCAAGCGCTA CACTTACGAT GAGTATGTCT 
    GGGCTGCTGT CTCGCTCTAC CTCGACGTGA TCAACCTCTT CTTAGCTCTG 
    CTGCGAGTGT TGAGGGCAGC TGATAACTAG TTCATCAAGG CTAGTCTCTA 
    CCCTGCACAT AACGAATGTC CGTGGATTCC TGTACCCTGA TTAAGCATCA 
    CGCTTTTGTT GATTCTGCTG TAAATTCTTG CTTAGTGGAT CCTGGAGACT 
    TTTTATGGAA CCGCATAATT GAATTTGTTA GCTATATTTC AACAAATAAA 
    TGCAATTGTT GCCTTGCTTC

    Gene models with high sequence identity

    1. AT3G63310.1 [+] show detail - Bax inhibitor-1 family protein
      E-value: 2e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Bax inhibitor-1-related 1.2e-54
    HMMPanther GLUTAMATE-/ASPARTATE-BINDING PEPTIDE-RELATED 1.9e-135
    HMMPanther Bax inhibitor-1-related 1.9e-135

    See the detailed result >

    AT3G63310.1

    Model type
    Protein coding
    Short Description
    Bax inhibitor-1 family protein
    Curator Summary
    Mediates cell elongation in brassinosteroid signaling.
    Computational Description
    BRZ-INSENSITIVE-LONG HYPOCOTYLS 4 (BIL4); CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT1G03070.2); Has 5145 Blast hits to 5145 proteins in 1455 species: Archae - 0; Bacteria - 2761; Metazoa - 841; Fungi - 142; Plants - 239; Viruses - 82; Other Eukaryotes - 1080 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR