K08131

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08131

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08131

Determination of introduced cDNA(s)

  • J033044B03 - Rice Full-length cDNAs - Original: J033044B03

    full reading [+] show sequence

    Nucleotide sequence: J033044B03 - full reading
    GGTGACTCTT GGTTCGCTTT GGGTCATTCC GTTCCGCCGC ATCCTCCTCT 
    GCCGTAGCTT TAGGTTTTAC CTCCTCTCCC GACTCTCCTC CGCTTTAATC
    GCACCGCCGG CCGCCGGCGA CCATGTTCAA AAAGTTCTCT TTTGAAGATA
    TATCTGCGCA GAATCAAGTT AAGGCCTCTG TGCAGCGGAA GATTCGGCAA
    AGTATTGCTG ATGAGTACCC TGGCCTCGAA CCTCTACTAG ATGACTTACT
    TCCAAAGAAG TCGCCTATGA TTGTTGTTAA ATGCCAAAAT CATCTGAATC
    TTGTGGTGGT GAATAATGTC CCACTGTTTT TCAATATCCG TGATGGTCCT
    TACATGCCAA CCTTGCGCCT TCTTCATCAG TATCCTGACA TCATGAAGAA
    GTTCCAAGTG GATAGAGGCG CTATCAAGTT TGTTCTCTCT GGTGCAAACA
    TAATGTGTCC TGGATTGACA TCTCCAGGTG GTTCCTTGGA TGTTGAAGTT
    GAGGAGGAAA CACCAGTGGC TATAATGGCT GAAGGCAAAC AGCATGCATT
    GGCAATTGGA TATACAAAGA TGTCAGCAAA GGACATTAAG ACTATCAACA
    AAGGAATTGG AGTTGACAAT ATGCACTATC TAAATGATGG CCTGTGGAAG
    ATGGAACGGC TCGAATAAGT AAAATCCACT AGGGAAGCAT AATTTGCTGC
    GCCATATTGA AATGTAATGA GGGCTGGAAT TATGTATCAA TGCATCTTGT
    GTCATGTAAA CACATAAAAT AGCCAGCAGC TACATGGTGC TCCAAGCCTG
    TTCGAGTTTA CTGTGACCAT CAAGTTTTGG AGATGTTTGG CAAAACTTTG
    ACTGATAGTG CTGTGTTCAA CGCTTCACTT GGTATTATCA ATCCAGAACA
    CTGTACAATG TTGGTAATCC TATCACTAAT GATTTGCACT TATTACCAAT
    AAAATTTCAG ATGAGCT

    Gene models with high sequence identity

    1. AT1G09150.1 [+] show detail - pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
      E-value: 5e-70; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MCT-1 PROTEIN 1.7e-87
    HMMPIR Translation machinery-associated RNA binding protein, predicted 8.8e-51
    HMMSmart Pseudouridine synthase/archaeosine transglycosylase 9e-13
    HMMPfam Pseudouridine synthase/archaeosine transglycosylase 9.1e-21
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 7.7e-21
    HMMTigr Uncharacterised domain 2 1.1e-26
    ProfileScan Pseudouridine synthase/archaeosine transglycosylase 14.501
    Gene3D no description 2.4e-20

    See the detailed result >

    AT1G09150.1

    Model type
    Protein coding
    Short Description
    pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
    Computational Description
    pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR