K08203

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08203

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08203

Determination of introduced cDNA(s)

  • J013000P02 - Rice Full-length cDNAs - Original: J013000P02

    full reading [+] show sequence

    Nucleotide sequence: J013000P02 - full reading
    CCCTCTCGAG CAAGCACCCA AACCCTCCCC TCTACCCCGC CGCCGCCGCC 
    GAGGAAGGGG CAAGAGGAAG CCGGCGAAGA TGAAGACCAT CCTGGCGCCC
    GAGACGATGG AGATCCCGGA GGGGGTGACG GTGCAGGTCG CCGCGAAGGT
    GGTGACGGTG GAGGGCCCCC GCGGGAAGCT GACCCGCAAC TTCAAGCACC
    TCAACCTCGA CTTCCAGCTG CTGGAGGGCG GCCGCAAGCT GCAGGTGGAC
    GCGTGGTTCG GCACCCGCCG CACCATGGCC GCCATCCGCA CCGCCATCTC
    CCACGTCCAG AACCTCATCA CCGGCGTCAC CAAGGGCTAC CGCTACAAGA
    TGCGCTTCGT CTACGCTCAC TTCCCCATCA ACGCCTCCAT CACCAACTCC
    AACACCGCCA TCGAGATCAG GAACTTCTTG GGCGAGAAGA AGGTGAGGAA
    GGTTGACATG CTCGAGGGGG TGACCATCTT GCGGTCGGAG AAGGTGAAGG
    ACGAGCTCGT CCTCGACGGC AACGACATCG AGCTCGTCTC TCGCTCAGCA
    GCCCTCATCA ACCAGAAATG CCACGTGAAG AACAAGGATA TCAGGAAGTT
    CTTGGATGGT ATCTACGTGA GCGACAAGGG TACCATCACA GAGGATGCGT
    AAACTCCTAT CTTCACCTAG TATCATGAAG TGCTGTTTCT TGTCTCCCGT
    GTCTGATCAT CCTCTGAGTT GCAATTTTCT GAGAGACTGA ATTTTGTAAT
    GGTGGGTTAT TTAGGATGTA ATGGAGCATG GTATCTTATC CTACATATTG
    TTTCTGTTTG CGATTATGAA GTCTATTTAT CATCCCCTAA AGACAGTTTA
    CTGGAAGCAT TCGTGGTTAG ATAAACAGCA TAATGC

    Gene models with high sequence identity

    1. AT1G33140.1 [+] show detail - Ribosomal protein L6 family
      E-value: 9e-74; Score: 273.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L6, conserved site-2 0
    Gene3D Ribosomal protein L6, alpha-beta domain 2.7e-18
    Gene3D Ribosomal protein L6, alpha-beta domain 4.9e-36
    superfamily Ribosomal protein L6, alpha-beta domain 2.2e-29
    superfamily Ribosomal protein L6, alpha-beta domain 8.2e-19
    HMMPanther 60S RIBOSOMAL PROTEIN L9 6.6e-126
    HMMPanther Ribosomal protein L6 6.6e-126
    HMMPfam Ribosomal protein L6, alpha-beta domain 0.000000000000022
    HMMPfam Ribosomal protein L6, alpha-beta domain 0.000000000000034
    Coil coiled-coil 0

    See the detailed result >

    AT1G33140.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L6 family
    Curator Summary
    Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
    Computational Description
    PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR