K08222

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08222

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08222

Determination of introduced cDNA(s)

  • J023076B14 - Rice Full-length cDNAs - Original: J023076B14

    full reading [+] show sequence

    Nucleotide sequence: J023076B14 - full reading
    GAATCGATCA CTCCACTGGT GAGTAGTGAG TGGCTAGTGA CTGGTCAGTT 
    CATCACTTGT GAAGGTTTTG CAATCAGGAA AAGTTCAGAA GATCATGGGC
    AAGCTCTGGA CAATCCTCAC TCACGTTCAT TCCCTTGCAG GGCCTACCGT
    CATGCTCCTG TACCCCTTGT ATGCGTCGGT GCAGGCCATG GAGAGCCCAT
    CGAAGCTTGA CGACGAGCAG TGGCTGGCCT ACTGGATCCT CTACTCCTTC
    ATCACCCTCG TGGAGATGCT TCTCGAGTCC CTCATCTACT GGATACCGAT
    CTGGTACGAG CTGAAGCTGC TGTTCATCGC GTGGCTGGCG CTGCCCAACT
    TCAGGGGAGC CGCGTTCATC TACAACAGGT TCGTCAGGGA GCAGCTCAGG
    AAGCATGGCC TCGCCGGCGC CGGCGCCGGC GCCGCCGCCA GCGTCGGCAA
    GAAGGACAAG TCGTCGCCGT CGTCGTCACC CAAGGACAAG GAGAAGACCA
    AGAGCAAGTT CCTCTCCTTC GTCACTCCCA AGAAGGATCA TGAAGCTTAC
    TGAGCCAAGA AGTGCTGATC AGTCGGATCC CTGAAGATAG TTTTTTAGTG
    TGTGTACTGT TCCATTTGTG TTTGTCCCTC TTCCTCTCCT TCAGAAGAGG
    CAGCTAGCTA GCTTCATGTT TGGCTGGTCT TTTTGGCCAT CTGTGCATGT
    CTGTAAACTT TATTGGAGTG AGGGGAAAAA AGAGCATAAT TAGTTGCTCC
    ATGTTGAGTT GTTAGAGTGG TTTCTTGTAA ATGTAATTCA GGATCTCAGA
    TGAGCAGACA ATAAAAACAC ACTGTTCC

    Gene models with high sequence identity

    1. AT5G50720.1 [+] show detail - HVA22 homologue E
      E-value: 2e-43; Score: 172.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TB2/DP1/HVA22 related protein 5.6e-32
    HMMPanther HVA22-LIKE PROTEIN 1.4e-51
    HMMPanther TB2/DP1/HVA22 related protein 1.4e-51

    See the detailed result >

    AT5G50720.1

    Model type
    Protein coding
    Short Description
    HVA22 homologue E
    Curator Summary
    Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.
    Computational Description
    HVA22 homologue E (HVA22E); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue D (TAIR:AT4G24960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR