K08224

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08224

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08224

Determination of introduced cDNA(s)

  • J013046E02 - Rice Full-length cDNAs - Original: J013046E02

    full reading [+] show sequence

    Nucleotide sequence: J013046E02 - full reading
    GTGTCATTAA ACTCTACAAC GTACGTATCT CTCCTCTCCT CCTGCTCCCG 
    AGCATTCCGT CCCCATGGCT GTTGACGATC TAAACCACCA CCTCATCGCC
    GTCGGAGTCG GAGAAGAAGC CGCCACCGCC CATTGTGGGC TGCGCACCCT
    TGTGCGGAAT ATGGCGCAGC TGGTGGTGTC GCTGGGCATA TTGGTCGCCG
    CCGACAAGTT GGTGGAGCAG GCCTTCGCAG CCGCCTCCAT CAAGTTCCCC
    AGCGCCCTCT TCGCCATGTT CTGCGTCTTC GCCCTCCTCC TCTTCCTACC
    TCCTTCGCTC GCCAACGGAT TCATGGCTTT CTTCGACCCC GCCACCGTCT
    TCATCCACAG GTGGCTGCCC CTCTTCTTCG TCCCCTCCCT CGTCGTCCTG
    CCGCTTGCCG TCAGGGACGT CTCGCCTGCT TCTGCCCTCA AGATCCTCTT
    CATCACATTT GGTGGCTGGT TTGCTTCACT GGTGGTGGCT GGTTACACGG
    CGCTGAGTGT GAGAAGGATA GTGAAGACAC AGCTTATACC AGCTGAGCCC
    ATGAAGAGAC CGTCTCCTTT CGGGCCGCTT GAATTCTGGG CCTGGGCTGC
    TGTCTTTGTT GCTTCCTTTG CTGTTGCGTA TGTTTCCCCC ACTGCGCTTG
    GTACCACCGC AACAACATGC CTTCCTTTCT TGCTTGCTTC CACTGTTTTC
    GGTTACATCC TTGGTTCCCG GTTACCATCT GGTGTCAAGA AAGTGCTACA
    CCCAATCATC TGTTGTGCAC TTTCTGCAGA TTTGGCGGCA GTAGCATATG
    GGTATCTCTC CCGGTCTGGA GTGGATGCAG TGCTAGGTGA TTACCTCACA
    GAGTCTCCGT CAAATCCAGG AGCTGGTGAC ATCCTCATGG GATTTCTTGG
    GTCTGTCATC ATATCGTTTG CATTTTCAAT GTTCAATCAG AGAAAGCTTG
    TAAGGAGGCA TGCAGCGGAA ATTTTCACAT CAATCGCTGT GGCATCAACA
    TTCTCGTTAT ATTCAACTGC CATCCTAGGA CGAGTGGTAG AGCTAGAGCC
    AATATTGACC ATATCAATAT TGCCCAGGTG TATAACCGTG GCATTAGCTT
    TGAGGGTAGT TTCTCTCTTT GAAGGTGTAA ATACTTCAGT AACCGCAGCG
    GTGGTTGTCC TCACGGGGCT GATCGGCGCA AATTTTGCGC AAGCAGTGAT
    GGACAAGCTT CGCCTCAAAG ACCCCATCGC ACGAGGAATA GGGACAGCTT
    CCAGTGCCCA TGGACTGGGA ACGGCAGCGG TGTCAGCCAA GGAGCCTGAA
    GCGTTGCCCT TCTGCGCCAT CGCCTACGCC CTAACGGGGG TCGTCGCCTC
    GTTATTTTGC TCTCTTCCGG CGATCAGGCA CAGCTTAGTC TTCATAGCTG
    GCGATGCCTC TGCCTCACAA ACACAACACT TTTCTTACTA GTATTATTTG
    GATATATATT TGTTTGTCTG TCACTATTCA TGAAAAACAG ACCCAGTACA
    GATTGATATT GTGATTAATA ATCCTACGAC CGAATAAATA CTGTATATAC
    AGAGACACGT ATATATGGTA GGAGTAACAT GGAAGGGAGA ACTATTTGTA
    TATGTAATTA ATTTTTGTAA GGGAGGACCT GGACTTGGTG G

    Gene models with high sequence identity

    1. AT1G32080.1 [+] show detail - membrane protein, putative
      E-value: 2e-146; Score: 516.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G32080.1

    Model type
    Protein coding
    Short Description
    membrane protein, putative
    Computational Description
    membrane protein, putative; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LrgB-like protein (InterPro:IPR007300); Has 3603 Blast hits to 3592 proteins in 1271 species: Archae - 22; Bacteria - 3356; Metazoa - 0; Fungi - 58; Plants - 57; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR