K08229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08229

Determination of introduced cDNA(s)

  • J023119K20 - Rice Full-length cDNAs - Original: J023119K20

    full reading [+] show sequence

    Nucleotide sequence: J023119K20 - full reading 
    TATCGTCTCT GCACTCACAC TGCACAAAGA TGTTTCCCAG TAGTGTAAAT 
    ATGCGGGAGC AAAATAATAT CATAATAATA TCAATAGCCA TGACCATCCT 
    CCTACTCGTT GTGTTCTTCT GTCGGATGTT GGGTAACATG GCGGGCAAGA 
    ACAAGAGGAA GAAGCAACCT AAGCTACCAC CCGGGCCAGC TACTATGCCG 
    GTGTTGGGTA ACATTCACCA GATTCTGATG AACAAGCCGG TGTTCAGGTG 
    GATCCACCGC CTTCTCGACG AGATGGACAC CGAGATCCTG TGCCTCCGTC 
    TCGGCAGCGT CCATGTGATC GCCATCGCCT CACCGGAGAT GGCCCGGGAG 
    GCCCTGCGCA GGAACGATGC CGTGCTGACT TCCCGGCCGG TATCGTTCGC 
    GTGGCGGGCG TTCAGCTTTG GGTACAAGAA CACCGTTGGG TCGACGGGCG 
    ATCAGTGGAA GAAAATGAGG CGGATGCTCG CGTCGGAGAT CCTCTCATCG 
    GCCATGGAGC GGCGAATGCT TGGCCAGCGC GTCGAGGAGG CTGACCACCT 
    TGTCAATTAC ATCTACAGGA ACTGTAATAA TGGCACTGTA GACATCCGGC 
    ACGTAACGAG ACACTTCTGT GGCAACATCA TCAGGAAGCT GGTGTTTGGC 
    CGGAGACACT TCGCCTTCGG CGCTGGCAAT ATCGGCCCTG GCCGTGATGA 
    GGAGGCCCAC ATTGACGCGC TCTTCACGGC GCTAGACTAC CTCGGCGCAT 
    TCTCCATCTC CGACTACTTC CCGTCGTTGG TTCTCAATGG CCTGATGAGT 
    ACATTCAGAC GGCTGCATGA TCCAATCATA ATGGAGAGGA TGGAAGAATG 
    GAGGGCTCCC AGGAGAAATG GTGATGAGAG GAGAGAAGTT GCCGATTTTC 
    TGGATGTGTT GATCTCCTTG GACGATGCAC AGGGAAAACC GTTGTTGTCA 
    CTTGATGAGG TCAAGGCAGA AACGCTGGAA ATAATCCTTA ATTCGGTAGA 
    CAACCCATCA AATGCTGTAG AGTGGGCACT GGCAGAGATG GTGAACAATC 
    CAAAGGTCAT GAAGAAAGCA GTAGATGAAC TCGATATGGT TGTCGGTAAA 
    GAAAGGCTTG TCGAGGAATC CGACATTCAC AGCCTCACAT ACCTCAAGGC 
    GTGTATCCGG GAGGCGTTCC GCATCCACCC CTACCACCCA TTCAACCCTT 
    CCCATGTCGC GATCGCTAAC ATCACCATCG CTGGATTCAT GATCCCAAAG 
    GGTAGCCATA TCATTTTAAG CCGAATTGGG CTTGGTCGAA ACCCTAGAGC 
    ACGGGATAAC CCACTCGAAT TCCGACCAGA GCGACATTTG AAGAATACTG 
    ATAATGTGGT GCTAGCTGAG CCAGAGTTAC GGTTTTTATC ATTCAGTGCT 
    GGTAGGCGTG GCTGCCCCGC CGTATCACTC GGAACTTCAA TTACAATGAT 
    GCTTTGGGCC GAAAAACTCA ATACTGATGT AATAAAAAAA CATATTTGTA 
    ATTAAAAAAT ATTTACAAAT AGGTCCTTGG CGCCAATAAC GCTGGCACTG 
    AGGAACTATT TGTAAATATT TTACAAATAA AACCATTTTT ATT

    Gene models with high sequence identity

    1. AT4G39950.1 [+] show detail - cytochrome P450, family 79, subfamily B, polypeptide 2
      E-value: 4e-121; Score: 432.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYTOCHROME P450 SUBFAMILY 79 6.1e-265
    HMMPanther Cytochrome P450 6.1e-265
    Gene3D Cytochrome P450 1.2e-84
    superfamily Cytochrome P450 1e-90
    FPrintScan Cytochrome P450, E-class, group I 3.2e-20
    FPrintScan Cytochrome P450, E-class, group I 3.2e-20
    FPrintScan Cytochrome P450, E-class, group I 3.2e-20
    FPrintScan Cytochrome P450, E-class, group I 3.2e-20
    FPrintScan Cytochrome P450, E-class, group I 3.2e-20
    FPrintScan Cytochrome P450, E-class, group I 3.2e-20
    FPrintScan Cytochrome P450, E-class, group I 3.2e-20
    HMMPfam Cytochrome P450 3.6e-67
    PatternScan Cytochrome P450, conserved site 0

    See the detailed result >

    AT4G39950.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 79, subfamily B, polypeptide 2
    Curator Summary
    Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.
    Computational Description
    "cytochrome P450, family 79, subfamily B, polypeptide 2" (CYP79B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 8 processes; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily B, polypeptide 3 (TAIR:AT2G22330.1); Has 28507 Blast hits to 28366 proteins in 1550 species: Archae - 44; Bacteria - 2565; Metazoa - 10705; Fungi - 5395; Plants - 8898; Viruses - 0; Other Eukaryotes - 900 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR