K08236

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08236

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08236

Determination of introduced cDNA(s)

J013035E10 - Rice Full-length cDNAs - Original: J013035E10

full reading [+] show sequence

TTGGTATCAA GGATAAGCAG CCGAGGAAAA GGTATTTGAC GGAAGCCTGC 
GATGTCTGCG GCGCCGGCTG CGAGCGGCTG GTTGCGGCCG TCCGCGACCG 
CGCGGCTCTG CGAGGCGGGG TTCTTCACCG ATTACGCCAA CCCCGCCACT 
ACGCGGATCT GCATCGGCCG GAGGCGGAGC GGTGCGCCGA GAAACATGGC 
TTCAAGTTGC ATCATCCAAT TTGGGCCGAT GCAAAATTGC TCATGTTAAA 
AGTGGAGATG CTGATGGTTA CCCAACGACT GAAGATTTGT CAATTGACGA 
GGAAACCCTG CAGCGTAATT TACAGACAGC CATCCAGGAA GAAGATTATT 
CCCGGGCTGC AAAGATAAGG GATGATCTGC GCATCCTCCA TGAAGATACC 
AAAGCTTCCC TCCTTGCAGC AAACACACGG TTTTACAATG CTTTCAAGAA 
TGGCGATCTT GCAGCGATGT ACTCTTTATG GGCTAAGGGT GACCATGTAT 
ATGTTATCCA TCCTGCTGCG GGTCGGATAT CAGGTTATGA CGTGGTCATG 
CAAAGCTGGG AGATGGTATG TGGCGCAGAT TATGAGTTCC CACTAAACAT 
TGATCTGAAA AATGTAGAGG TTCATGTGCA TGGTGACCTT GGTTACGTCA 
CATGCTTGGA AGTGGTTAAG ACCAAAGGAA GAACATGGGG GAAGCAAGTC 
GCCACAAACG TCTTCGAGAA GGTTGATGGC ACATGGCGCA TGTGTGTTCA 
CCATGCATCA CACATAGAGG AATGAAAACC TTAGTTGATT TGGCATGGAA 
ATTTTGCAGA AAAGCTAGAC AGGCAATACA TGATTTCGAG ATTTCTATCT 
TAGCAGCTGC ATCATTAGTC TATGTTTTCT CGAGTCAATT GTATCGATGC 
TTAAGTTTTC AAACTGAATT TTTTGTGGTT TCGTTTGAGA TTCCATAGTG 
GTTGGCATAT TATGTCACTT GAGATTATAT ATGACTAGCT ATTTTTCCAT 
TTCTTTTTGG CGGCTAACTG GGAATGGACT TGATCTGCAA GTAACTCGTA 
CCAGGCTACT TCACCG

Gene models with high sequence identity

AT3G09250.1 [+] show detail - Nuclear transport factor 2 (NTF2) family protein
E-value: 4e-54; Score: 208.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Calcium/calmodulin-dependent protein kinase II, association-domain	0.0000018
HMMPfam	UvrB/UvrC protein	0.0000022
superfamily	NTF2-like	3.1e-24

See the detailed result >

AT3G09250.1

Model type: Protein coding
Short Description: Nuclear transport factor 2 (NTF2) family protein
Computational Description: Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT4G10925.3); Has 282 Blast hits to 282 proteins in 97 species: Archae - 0; Bacteria - 155; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link: InterPro Scan - TAIR