K08239

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08239

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08239

Determination of introduced cDNA(s)

  • J023088M23 - Rice Full-length cDNAs - Original: J023088M23

    full reading [+] show sequence

    Nucleotide sequence: J023088M23 - full reading 
    GGTGTGATCG ATCATCTGGT GGTAGTGAAC CGTGAACACA CGGCGCGACA 
    GGTAAACTAG TGAGAGAGCG ACTGCGAGAT GGAGGAGAAG GGCGCGTCTC 
    CCGCGGCGGC GGCGGCGACG AGCGGGGAGC CGGGAGCGGC GGCGGGGACG 
    ATGAAGGTGG TGGTGGCCGT GGACGCGAGC GAGGAGAGCC TGAACGCGCT 
    GTCGTGGGCG CTGGACAACG TCATCGGGCG CCGCGCCGGC GCCGTTTCGG 
    TCGTCGTCGT CCACGCGCAG CACGGCCCCG ACCACTTCGT CTACCCCGTC 
    GCCGCGCACG GTATCGGATG TCAGCACACC GGCTAGACCA TATATACAAA 
    CTAGTGTTAA CTTTTACCAG TTCACTTCGC ATTTCACGAG ACTGACACGG 
    CGTGTACATG TGCGTGTGTC ACGGAAGCAG CCATAGCCTA CGCCCCCGCC 
    TCGGCGATCG AGTCCATGAG GAAGGCGCAG GAGGAGATCT CCAGGAAGGT 
    CGTGTCGCGC GCGCTCGACG TCTGCAAGCA GAGAGAGGTG AGCGCGACGG 
    GCGCCATCGT GGAGGGCGAC GCCAAGGAGG CCATCTGCCA GGCCGTGGAG 
    GAGATGCACG CCGACATGCT CGTCCTGGGA AGCCGCGGCC TAGGCAAGAT 
    CAAGAGGGCG TTCTTGGGCA GCGTCAGCGA CTACCTCGTC CATCACGCGT 
    GCTGCCCCGT GCTGGTCGTG AAGCCCACCA AGGCGCACGA CAAGTGAACT 
    CGATCTGCTG CTCCTTTGCT GCCTGATGGA TGTCCTGTGA AGTGAAGACT 
    TGGCTATCTT TTGCTACTGA TTACTCATGG AGCCGGTGGC TGCTGTTATT 
    ACTTGTGTTG AAAATAAAAG GATATGTTAA GCTTCTGAGG CTGGCAGTTC 
    TTATGTAGAT GCAACGTGCA AACTGAAACT AATACATGGA ACTGCCGTTG 
    AAGCTTCTGA GCTCCTGTGT AGATGTAATG TGCAAAACTG CAAACTGAAG 
    CAAATACATG AGTAGTACTT GTGG

    Gene models with high sequence identity

    1. AT3G11930.4 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 7e-28; Score: 121.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Universal stress protein A 0.00000000000139999892049878
    FPrintScan Universal stress protein A 0.00000000000139999892049878
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 4.49999046578006e-23
    superfamily SSF52402 2.30000440726539e-24
    HMMPfam UspA 4.80000000000001e-20
    HMMPfam UspA 0.0000015

    See the detailed result >

    AT3G11930.4

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Computational Description
    Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G58450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR