K08251

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08251

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08251

Determination of introduced cDNA(s)

  • J013169C15 - Rice Full-length cDNAs - Original: J013169C15

    full reading [+] show sequence

    Nucleotide sequence: J013169C15 - full reading 
    CCTTCTTCCA ACCCCACACA AAGCGGCGCC TCCGCACCCG TGTGTAAAGA 
    AAAAAAAATC GGAGGCGAAA ACCTCTCAAA CCCTAATCCC CTCGTCCCCC 
    CCATGGCGGA GTCGGACGCG GCGGCGCCGC CGCCGGAGGT AGTCGCCCCC 
    GTGGAGGAGC AGACGGCCCC CGCGGTCGGC GCATCCACGC TGGAAGAGGC 
    CGAGCCCGCC GCGGCCGCGG CCCCGGCCGC CGAGGGCGAG GGCGAGCACA 
    AGAGGAAGCT CGAGGAGGTC GACGCCGCCC CCGACGCGAA CGGCGGCGGC 
    GAGGACGACA AGCGGCCCCG CGTGGAAGGC GACGGCGAAG GTGTCGTGCA 
    GAGCAACGAG TCCTCCGCGA AGGTCGATGA GCCGGTAGCT ACAGAGAACA 
    GTGACGCTGC CCCTGCTGAG GCATCTGTTG ATGCTGTGAA TGGCAAGGTT 
    CCTCCTACCG AGGATTCGCA GATGGGCTCT GGGGAGAAGC CTGCAGCAGA 
    AGCAGCAGTG ACTGAAGCCC CGCCGCAAGA AGGTGGTGGC GCACCAGGAC 
    AGGAGACGTC TCGGATAATC AACGTGCCCA ATAACAAGGT CGGAGTCCTA 
    ATAGGAAAAT CTGGGGAAAC AATCAGAAAC TTGCAAATGA ACTCGGGCGC 
    GAAGATCCAA ATCACAAAGG ATGCTGAGGC AGATGCAAAT GCCCCAACTC 
    GTTCTGTTGA ACTAGTTGGA ACCCTTGAGA GTATTGACAA GGCCGAGCGG 
    CTGATTAAGA ATGTTATAGC TGAGGTATTC CACGTGCTAA ATTAATTAGC 
    CGTGATTTCC ATACTAGTTT GAGCTGTATT TTCATCCAAG CAACTTAAAC 
    TTGTGACATT CTTTATTACT TCCACTTCAG GCTGATGCTG GTGGTTCGCC 
    TGCTCTGATC GCTAGAGGTT TTGGGTCTGG ACAGTCAGGC TCTGAGCAGT 
    TTGAGATGCT AGTCCCTGAT AATAAGGTCG GTTTAATTAT CGGAAAAGGC 
    GGCGAGACCA TTAAAACCCT CCAAACTAGG TCTGGTGCTC GTATTCAGTT 
    GATTCCCCAA CATCCTCCGG AAGGTGTTAC ATTGACAGAA AGAACTGTAC 
    GTATTACTGG GAATAAGAAG CAGATAGAAG CGGCAAAAGA TATGATTAAG 
    CAAGCTATGA GTCAGGTAAT GTGATTCTGT GTTTCGCTTT CAACTGTTCC 
    TTCATGCTGT AAATAACTAG TGATATTAGA TGATGCTGTG ATCACCCAAT 
    GATTGTGCAA TTCAATCATG CTGTGAAGAA CTGGGCGATG CTATATGATG 
    ATGAGATGCT AAATTCCTAC TTTATGCGTT TCCATTCTAT TCATGCTGTG 
    ATTATTTTTT CATTGAAACT GAATTTCTGT TACCTGCTCT GGAATCATGG 
    TGTGTATTAT CGAACCTATT GTCTCTAGCA TGACCTTACT ATCTTCGTAT 
    TATATGATTG GTATAATCCA ATATGTTTTC CTGTTCTCCC TGATAATAGA 
    GGTCTTAGAA ATATAGAAGG TGTTTTTTGG TTCTTGTTGA GTAAACCTGT 
    GATTTCTTTC AATCAGCTTA ATTAAATCTG TGCCCTCTTA TGGTTTGTGT 
    AGATGTTATT TTATTGATAC CTTCTAGAAC TGGTTCCAGC ATTTGTTCAT 
    TTCATTTTTA ATAGTTTTCA TCTCCGCATC TTATAAACTT GAAGTAAATT 
    TCTTTTACAC AAAAACGCTT CAATGCAAAT GTATTTTGTT GAATGAAACA 
    CAATTTTACT GCGTCAATGG GGTGCTGGAT TTTTCCTCGC TTATTAAATC 
    TTAAGTGTAT AAACTAATGT CTTTTCTACA ATGGGCCTTG TATGAAGTAC 
    CGATCTTGAA ATATAGCAGT GCCTAATTGG ACTGGAAGGT AAGTTCTTCT 
    TAATTGGTGA TAAGTTTTAG TGTCTTTGTT GCTAAGTCAA TGAGATGCCA 
    CATCCTTGAG AGTATTATGT ATGGTTATAT TAATACTTAA TTTATACAGA 
    ATAATTTGTC TATAATATTT CATGAGTTAT AATCTCCTCG TGGTCAATTA 
    TTTTTTTGTG GGAATATTTG TCATCTTCCA TATAATTCAG TATCTTGCCT 
    TGCTGCCTTT TCAATGGCAA AATTTATTCC ATGTCCATGA ATTTTAAGGT 
    TTTTGCATTG TCTTAAATTA CAAATGATGC ATATGTTTAG TTTCCCATGA 
    AAATGTTGTT CATTCATGGA TTAACGATAT GGAACATGGT GTGCATGATC 
    ATCAATGTTA ACTATGAATG AAGTTAGAAT AAATGATTTG ACTCTGCAAT 
    GGATAGCTTT TGAGGATTTG TGAGATATAT TCACGTTGAC ATAAAAAGAT 
    AGTTTAGTCT CGGTGGCTTG ATAGTTCTTC ATAGTTCGTC TAGAAGCAGA 
    ACTTACCTTC GTGTATGATA GTGTGGTTGG ACTTCAGTAC TTGATCGTTA 
    AAACCTTGGT GCTGTCACAT GATCAATGAA CAATTACTGT GGTACTAGTT 
    TCAATCTTTA GTCGGCTAGT CTTTTGAGTT TTGGTAACTG CTTACTGCTA 
    GATGAGATCT GATTATGTTT CCTACATAAG AAGTCAGAAC TGACTCATCA 
    AGGTTCCTCT CGCTTCCAGT TTCCATGATT TATTTTGTTT GAAGGTGCCA 
    ATTTGGAGTT GGTTGGGTAT CCTAATGCAG ATACAGCTAG GCTTTCATCA 
    TGGGCTCCAC ATCCTTCATC CATTACATGC ACAGAAGAGG GATATTGACC 
    ATTATCCCTT GCCCTTGCAT GGTTTGTGTA GTTGGTAACT GGTAAGGCTG 
    CTTATTGCTG AAATG

    Gene models with high sequence identity

    1. AT4G10070.1 [+] show detail - KH domain-containing protein
      E-value: 4e-42; Score: 89.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 6.6e-25
    HMMPanther RNA-BINDING PROTEIN RELATED 6.6e-25
    HMMPanther UNCHARACTERIZED 2.9e-32
    HMMPanther RNA-BINDING PROTEIN RELATED 2.9e-32
    HMMPfam K Homology, type 1, subgroup 1.2e-14
    HMMPfam K Homology, type 1, subgroup 3.3e-19
    ProfileScan K Homology, type 1 17.422
    ProfileScan K Homology, type 1 18.177
    superfamily Eukaryotic type KH-domain (KH-domain type I) 3e-15
    superfamily Eukaryotic type KH-domain (KH-domain type I) 1.8e-16
    Gene3D no description 9.8e-14
    Gene3D no description 1.5e-16
    HMMSmart K Homology 6.5e-12
    HMMSmart K Homology 3.4e-18

    See the detailed result >

    AT4G10070.1

    Model type
    Protein coding
    Short Description
    KH domain-containing protein
    Computational Description
    KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G33680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR