K08313

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08313

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K08313

Determination of introduced cDNA(s)

  • J013153D05 - Rice Full-length cDNAs - Original: J013153D05

    full reading [+] show sequence

    Nucleotide sequence: J013153D05 - full reading 
    GTTATCTGCT AATCATCCCT GAAGAGCCAA AGAGTTTGTA CGCTGCCCTT 
    TGGCCTCCAT CCATCCATCC ATGGCTCCCG TCGTCTCCCG CGGCGGCGGC 
    GGCGGCGGGC GCGCGATGGG GGCGAAGGAG CGGAAGGAGG CGGCGCAGCG 
    CGAGAAGGAG GCCGGCGACG AGGCGTACGG CGAGGAGCTG TACAAGAGGG 
    CCGCCGCCCA CTATGCCGCC GCCGCCGACC TCGACCCCGG CGACACCTCC 
    TGCCTCATCA AACGCGCCGC AGCCAACTTC AGCATGAACA AGTGCAAGGA 
    GTGCGTGGCG GACTGCGACG AGGCGTTGGG GAGGAGGAGG AGGAGGGACG 
    CGCGCTGCGG CTGCGACGAG AAGCTGGCCG CCGACGCGCT GTTCCTCAAG 
    GCGCTGGCGC TGCTCAACCT CGCCGTCTGC GCCGCGGATC ACGAGCCGGC 
    GATCACGGCG CTGGAGGGGT CGCTGGAGCT GCGCCCCGGC AGCAAGGAGA 
    CGCGGGCTAA GCTGGACATG GCGAAGAGGA ACAGGGACGC GTTTGCGGAG 
    CAGGAGCGGC TCGATCAGGA AGCTGCCAAG ACCCACCGAG ACAGAGGCCT 
    AGAACTTCTC CGTAAGAAAA AGTATAAGGA AGCAGAAATG CAGTTTTCTG 
    AAGCTATAAA AAGGAACCCA AGGTATCCCA AGAACTTCAG TGACAGAGCT 
    CGATGCCTTG TCGAGCTAAA TTCATTGCCT AAGGCGCTTG AAGATGCAAA 
    TCGATGCATT GAGCTGGATG ATACTTTAGG GATGGGATAT CTCCGTAAAG 
    GTCTGGTTCA GATTGCGATG GCCAAATATG AGGATGCTAT TGCAACTCTC 
    GTAGACGGTT TGAAGCATGA CCCACAAAAT CTCAGTATTC ATAACAGCCT 
    AAGAGAATGT GCAGCACGCA TTAAAATGGC TAAAGACAGT GATGCCATAG 
    CAAAGGACTT GACGAAGCAC CAAAGAGAAA TAGAATGTCT GCATAAACAA 
    CTGAACGAAG GTGAGAACAA AGCATCCAAG GAGCGCTCAA GGCGGATGAA 
    ATCTGAAAAG CTGGTCAAGA CATTGTCAAG CCAAGTTGAA CAACTTAGGT 
    CAGCCAATGA GCGGATGCAA ATCTAGAACG CGAACTCTCA GAATGCAGAG 
    AGCGTTTTGA ACGGCTTCAA TTGATCCAAA ACCGCATACT TCAACATTTC 
    ACCTGTCCTA TATCTCATGA AGTCATGAAT GATCCTCTTA TGGCAGCTGA 
    TGGACACACC TACGAAGCTA AGTTTATCAG GGATTGGTTC CGCAGAGGCC 
    ATAACACATC ACCAATTACC AATGTTGAAC TTGAACACAA GAAACTCGTT 
    CCAAATCGGG CGCTGCGTTC TGCTATTGAG GAGTGTCGCA AATAACACAA 
    TATGATGCTA CTTTTAACCT CTGCTACAAG CATCACCAAA ACTGTTTTTT 
    GTGTTAAGTA ACGAACTGAA CAACTATGCT TTAATAACGA ACCATGATAT 
    AGCTTTTCAA TATGCAGATT CGGATTTGT

    Gene models with high sequence identity

    1. AT1G62740.1 [+] show detail - stress-inducible protein, putative
      E-value: 3e-32; Score: 137.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 9.6e-17
    superfamily TPR-like 1.5e-27
    ProfileScan Tetratricopeptide repeat 5.723
    ProfileScan Tetratricopeptide repeat 9.234
    ProfileScan Tetratricopeptide repeat 5.517
    ProfileScan Tetratricopeptide repeat 7.434
    ProfileScan Tetratricopeptide repeat-containing 18.794
    Gene3D no description 5.4e-20
    Gene3D Tetratricopeptide-like helical 1.4e-27
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam U box domain 6.1e-16
    HMMPanther STRESS-INDUCED-PHOSPHOPROTEIN 1 (STI1) (HSC70 4.2e-40
    HMMPanther TPR REPEAT CONTAINING PROTEIN 4.2e-40
    HMMPanther RECEPTOR PROTEIN KINASE-RELATED 2.4e-20
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.4e-20
    HMMSmart U box domain 1.9e-25
    HMMSmart Tetratricopeptide repeat 290
    HMMSmart Tetratricopeptide repeat 32
    HMMSmart Tetratricopeptide repeat 0.0049
    HMMSmart Tetratricopeptide repeat 29
    HMMSmart Tetratricopeptide repeat 2.1

    See the detailed result >

    AT1G62740.1

    Model type
    Protein coding
    Short Description
    stress-inducible protein, putative
    Computational Description
    stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 44605 Blast hits to 18649 proteins in 1479 species: Archae - 1696; Bacteria - 14533; Metazoa - 9820; Fungi - 2891; Plants - 3854; Viruses - 4; Other Eukaryotes - 11807 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR