K08324

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08324

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08324

Determination of introduced cDNA(s)

  • J023100D05 - Rice Full-length cDNAs - Original: J023100D05

    full reading [+] show sequence

    Nucleotide sequence: J023100D05 - full reading 
    GATCTTTCAC ACCAACAACT AATCCATCCC CCCCTCCACC TCCACGCGGT 
    CAGCGCTCGC TCACGCGACA CGCACCAACC CCTCTCCCCG CCGCCGCCGC 
    CGCCACCAAA CGCCGCCTCC GAAGAAGAAG AAGAAGCCTC CCTCGCAGGC 
    AGCAGGGTAT TTAATACGCC GCCCTGCTCG TCTCGGTTCC TGGGAACTTC 
    TCTTCTCCTC CGATTTGGCC TGTCAGTGCG CTCCGCTCCG CTCGCGCCTA 
    TCCGCGGATT ATCATGGGAT CGACGGCGCT CGGTGGCGGG GCTCCTGCTC 
    GCCTCGGCTT GGCCCCCAAG GATGGAGTCT TTGGATCTAA TCTGAAGCAA 
    TGCGGTGGTT TCATGCTCAA AACAACCCCT AAGGTTGGAT CCTCTTCAGT 
    CCGTGTGAGG GCATCTGTTG CTTCTTCACC GCAGAAACAG CACTCTCCCA 
    AGACATCAGG AGTTAAATCA GGGGAGGAGG TGCGCATTGC GGTTCTAGGT 
    GCCAGCGGTT ATACTGGAGC TGAGATTGTC AGGCTTCTAG CAAACCATCC 
    TCAATTTCGT ATCAAAGTGA TGACTGCAGA TAGAAAAGCT GGCGAACAGT 
    TTGGATCTGT ATTTCCTCAC TTAATAACAC AGGACCTGCC AAATTTAGTT 
    GCAGTAAAAG ATGCAGATTT TTCAAATGTG GATGCAGTTT TTTGTTGCTT 
    GCCACATGGT ACAACCCAGG AAATTATTAA AGGTTTACCG CAGGAACTGA 
    AGATTGTTGA TCTCTCTGCA GATTTTCGAT TGCGTGATAT CAATGAGTAC 
    GCTGAGTGGT ATGGCCATTC TCATAGGGCA CCAGAACTTC AGCAAGAAGC 
    TGTGTATGGC TTGACTGAAG TTCTTCGCAA TGAAATAAGG AATGCACGGC 
    TTGTTGCAAA TCCGGGATGT TATCCCACAT CTATTCAACT TCCTCTTGTT 
    CCTCTAATAA AGGCAAAACT GATCAAAGTG AGCAACATTA TCATTGATGC 
    AAAATCTGGG GTTAGTGGGG CAGGACGTGG AGCTAAGGAA GCCAATCTCT 
    ACACCGAGAT AGCTGAAGGC ATTCATGCTT ATGGAATAAA AGGCCACCGG 
    CATGTTCCTG AGATTGAACA AGGACTTTCA GAGGCTGCTG AGTCTAAAGT 
    CACTATCAGC TTTACTCCAA ATCTGATTTG TATGAAACGT GGGATGCAAT 
    CTACTATGTT CGTTGAAATG GCACCTGGAG TGACTGCCAA TGATTTGTAT 
    CAGCATCTCA AGTCTACATA TGAGGGTGAA GAATTTGTGA AACTGTTAAA 
    TGGTAGCAGC GTTCCTCACA CACGCCATGT TGTGGGATCA AATTACTGCT 
    TCATGAATGT CTTTGAGGAC AGAATTCCTG GACGTGCCAT CATCATATCT 
    GTTATAGATA ATCTTGTGAA GGGAGCATCA GGTCAGGCTG TTCAGAACCT 
    TAATCTGATG ATGGGTCTGC CAGAGAACAC TGGGCTGCAA TATCAACCCC 
    TATTTCCTTG ATCCTCTATG TCTGTGTTCC GTATGTTCTT TGTCGGGATG 
    ATACTTTGGA GTTCAGCTAC CCATTTCCCT CTGTTTACTG TTGAGACAAG 
    GTGCTCAACA TCAGAGTGTA ACCAAGACAA ATTTTCTCAA AGAGTAGCTT 
    GGTTTGTGCT GTTGTAGTTT TTATAGAGAT AAATGACAAT TTAGTAGTTT 
    AATGAGAATA TTAGCTCGGT GGATTTGGGC ATTGAAATCC TACGGGTATA 
    TCCTGTACTG CTTTGTGGTT ATGAAATCAA ATAAAAGTGT AAACCTCAGT 
    CAAGAGGCAT CAATCACCCC GCCTTCATTG GATGTAGATA GGGATATATA 
    TTCATATTTT TACTCGATGG AATTTGTTTT GCTTGCTAAT GCTTTATGAC 
    G

    Gene models with high sequence identity

    1. AT2G19940.2 [+] show detail - oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper io...
      E-value: 1e-150; Score: 530.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr N-acetyl-gamma-glutamyl-phosphate reductase 7.8e-192
    HMMPfam Semialdehyde dehydrogenase, NAD-binding 2.1e-29
    HMMPfam Semialdehyde dehydrogenase, dimerisation domain 3.9e-16
    PatternScan N-acetyl-gamma-glutamyl-phosphate reductase 0
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 2.9e-60
    superfamily NAD(P)-binding domain 2.5e-48
    HAMAP N-acetyl-gamma-glutamyl-phosphate reductase 39.478
    HMMSmart Semialdehyde dehydrogenase, NAD-binding 7.4e-50

    See the detailed result >

    AT2G19940.2

    Model type
    Protein coding
    Short Description
    oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding
    Computational Description
    oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, copper ion binding; INVOLVED IN: response to cadmium ion, cellular amino acid metabolic process; LOCATED IN: nucleolus, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase, dimerisation domain (InterPro:IPR012280), Semialdehyde dehydrogenase, NAD-binding (InterPro:IPR000534), N-acetyl-gamma-glutamyl-phosphate reductase (InterPro:IPR000706); Has 8034 Blast hits to 8033 proteins in 2187 species: Archae - 385; Bacteria - 4804; Metazoa - 0; Fungi - 163; Plants - 77; Viruses - 0; Other Eukaryotes - 2605 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR