K08327

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08327

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08327

Determination of introduced cDNA(s)

  • J033037A09 - Rice Full-length cDNAs - Original: J033037A09

    full reading [+] show sequence

    Nucleotide sequence: J033037A09 - full reading 
    GGCTTCTCCT CTCCCATCTC TCGCTTCGCT CCGCTTGCCT AGGGTTTCGC 
    CTCCCGCCGG CAGCCGCGCC CCCGCCGCCC TCGCCTCAGA TCCCGCCGCC 
    GGCGACCCCC CCACGATCCT CCTCCCCCGC CGCCCGCCGA TCCCGTCGAG 
    CTCCGGTTCG GTGTTTGCTC CCCTACTCCG CCGCCGCGAC GCCTCGGGCT 
    TGCAGAGTCT GGGCGGGCGC CGCGGGGGGA GTGCAGATCT AGGGTTTGGG 
    GGCTCTGGCT GGTGCATGAG AAGGGCACTG GAGTACGGAC GGCATGGAGG 
    TGGAGGCGGC GAGGAGGGAC GCGGCCACGC TGGACCCGGA GCTGCTGCAG 
    CTGCCGGAGC TCTCGCCTGG CGCGCTCCGG GAGAACCCCG CCCTTGCTGA 
    GGCGCTCTAC TCGCAGTGGC TCGCGCTCCC CGAGACATCC AAGCTGGTGA 
    ACTCTTTGAT TGAAGATGCA AAAGCTGGTG CTACATTGAA TGTTACTGGG 
    AGCTCTGCTA GCACAAATGC TGCTTCAAGT GGTTCTTTGC CATCAATGTT 
    TCCGGCTGGT AGTGCTCCTC CCCTTTCTCC TAGAAGCACT TCTGGCTCCC 
    CCCGTGTTAT GAGGCGAGGA TCTGGAGCTG GACCATCATC CTTGGGATCT 
    CCACTAAAAG TAGTTAGTGA ACCAGTGAGG GAGGTTATAC CCCAGTTTTA 
    CTTCAAATAT GGGCGCCCTG CTCCAAAAGA TTTGAAGGAG CAATGCTTAT 
    CTAGAATAGA TCACCTCTTT TTTGCAGGGG AGGGACTCCA GATTCAAGAA 
    TTTAGATCAG TCACAAAAGA TATATGCAAA CTTCCATCGT TCTTCTCCAG 
    TGTTCTTTTC AAGAAGATCG ATGCTGCAGG CTCTGGAACT GTCACAAGGG 
    ATGCGTTTGT TGATTACTGG ATCAATGATA ACAAGATTAC AATGGACACA 
    GCTAGCCAAA TCTTTGAAAT ATTAAGAAAG CCGGATTACA ATTATCTCAC 
    TCAGGAGGAC TTTAAGCCTG TCTTAAAAGA ACTTCTGGCA ACTCACCCTG 
    GATTAGAGTT CTTGCAAGGC ACCCCTGAGT TTCAGGAGAG ATATGCTGAG 
    ACTGTAATAT ACAGAATCTT TTATTCCATA AATAGAGCTG GAAATGGCCA 
    TCTTACCCTC AGAGAGCTAA AACGTGGGAA TTTAATTGCT GCGATGCAGC 
    AGCTGGATGA GGAAGAGGAT ATCAATAAAG TGTTGAGATA CTTCTCATAC 
    GAGCACTTTT ATGTGATATA CTGCAAATTT TGGGAGTTGG ACACAGATCA 
    TGATTTTTTG ATTGATAAAG AGAACCTTAT CAGATATGGA AATCATTCAT 
    TAACCTACCG AATCGTTGAT AGAATCTTCT CACAGGTCCC AAGAAAATTC 
    ACAAGCATGA CAGAAGGAAA GATGGGTTAT GAAGATTTTG TTTACTTTAT 
    TTTGTCTGAG GAAGACAAAT CATCCGAGCC TAGCCTTGAA TACTGGTTTA 
    AGTGTATTGA CCTTGATGGA AATGGCATTT TAACCACCAC TGAAATGCAA 
    TTTTTCTATG AGGAGCAATT GCACCGGATG GAGTGCATGG CACAAGAACC 
    TGTGCTTTTT GAGGACATAT TATGCCAGAT GATTGATATG ATTGGACCAG 
    AGAACGAGTG CTACTTTACA CTACGGGACT TAAAACGGTG TAAACTCTCA 
    GGGAATATAT TCAACATCCT ATTCAATCTC AACAAATTTA TGGCATTTGA 
    AACTCGTGAT CCATTCCTCA TTCGCCAGGA ACGTGAAAAT CCAACTTTAA 
    CCGAGTGGGA TCGGTTCGCA CATAGAGAGT ATATTAGATT GTCCATGGAA 
    GAAGATGGTG AAGATGCTTC AAATGGAAGT GGTGATGTGT GGGATGAATC 
    GCTTGAAGCT CCATTTTGAA ATATCTCTTG CTGGCTGAAT CTTGTGGGAC 
    ATGGATGGAA TTGGTTTGGA GGTCAAAGAA ATGTAAAGTT GTTCGCTAGC 
    CTGTGGAGAC CATTGCAGGC TTGAGGAAGT TTCAGTAACA CCAAAGACTT 
    CTTACAGGAT TTACTGTGCA GGTCTGATTC GATAGTATCG GTTGTCCAGT 
    TGTGCAAAAC ATTTTTGCTT GGCAGGAGAA ACGAGGAAGT TGATGTGGGC 
    GTCCTGCCTT GTCAAGGCAA CAACCTCAAC AGTCTCAAGT GATGCTATAG 
    TGGGGGACCT TTCATGGTCA ACATGTTTCT GTGTTCTTAT TGGTGCTTTA 
    GGGGGGGATG TCGGTTTATT CAATTGCTGT GCTCAAATTT TGGAGCTGAA 
    CTGTTATTGT TTGGCTGCCA TTTTCTTTGT TATTTTGTGG AAGTGCGAGC 
    AAGCAATTCC ATCATTAACT TTGATCATGG TATGTAGCTT TCTGGTTCTG 
    CTTTCTGTTC AGTATGGTGT TTTGTAGCTG TTGCCGTCAC TGGGTACATT 
    TTGGGAGGTA AGGTAAAAAG ACCTCAGGAT ATGGATATCT GTTGTCATTA 
    CCCATTTGTA ACATTAACAA GAAACGGTGG ATGGGTGCAT AAGAAATTTA 
    AATGAGGATG TAGGTTCCAT CATC

    Gene models with high sequence identity

    1. AT1G54450.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 0; Score: 759.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan EF-HAND 2 6.201
    ProfileScan EF-HAND 2 5.475
    ProfileScan EF-HAND 2 9.66
    superfamily EF-hand 2.5e-23
    superfamily EF-hand 7.6e-16
    Gene3D EF-hand-like domain 0.00000000059
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPanther PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED 1.9e-141

    See the detailed result >

    AT1G54450.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G28850.2); Has 645 Blast hits to 642 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 309; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR