K08330

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08330

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08330

Determination of introduced cDNA(s)

  • J023079K17 - Rice Full-length cDNAs - Original: J023079K17

    full reading [+] show sequence

    Nucleotide sequence: J023079K17 - full reading 
    GATCATCTCA TCTCACACCA AAAACGAATC AGCTCGTCTC CTTCCTCCGC 
    CTCCGCCTCC GCGAGCTCCC ATTCCATTCC CGGATTGCGC CGCCGCCGGT 
    GTTGCAGCAG CCATGGGGAT GGGGCCACTA GAGAACGCCG TGGTGGACGC 
    GGCGGCGGAG GCCGTGGCGG CGAAGGCCGC GGTCGGCGGC GTGGGCGTGG 
    GGGGTTCGTA CGCGGTGCTG CAGTGCGGGG AGGACTCGGA GTACGTGAGG 
    AAGGCGTACG GGGGCTACTT CGAGGTGTTC AGGGCGCTGC TGGCGGAGGA 
    CGGCGAGCGG TGGCGGGTGT ACCGCGCCGT GCGCGGGGAG CTCCCCGGGG 
    AGGAGGAGGC CGCGGGGATC GACGGGTTCG TCATCTCCGG GAGCTGCAGC 
    GACGCCCACG CCGACGACCC GTGGATCGTC GCCCTCGTCG ACCTCATCCG 
    CCGCCAGAAC GCCGCCGGCA AGCGCATCCT CGGCGTCTGC TTCGGCCACC 
    AGGTCCTGTG CCGAGCGCTG GGCGGCAAGA CGGGCCGATC GAAGAAGGGC 
    TGGGACATCG GCGTGAACTG CATCCACCCC ACCGCGGCCA TGGCGAGGCT 
    CTTTTCGCCG ATCAAGCTCC CCGTCCACAT GCCCATCATC GAGTTCCACC 
    AAGATGAGGT GTGGGAGCTG CCTCCTCAGG CCGAGGTGCT GGCGCGGTCG 
    GACATGACCG GCGTCGAGAT GTTCCGTCTC GGCGACCGCG CCATGGGCGT 
    CCAGGGCCAC CCGGAGTACA GCAAGGACAT CCTCATGAGC ATCGCCGACC 
    GTCTCCTCCG GAACGATCTC ATCCTGGATC ACCAGGTGGA TAAGGCGAAG 
    GCGAGCTTCG ACTTGCGGCA ACCAGACAAG GATCTGTGGA AGAAGGTGTG 
    CAGGGGTTTT CTGAAGGGGA GGCTTCAGTC ATCGCAGCAG CCGCAGCAGC 
    AGCAACATCA GAAGCAGCAG AAGGCGGCGC AGCTGGAGCT ATAGTAAACA 
    AGATTAGTGA GTGAGATCAG ATGGGGGCAT TGGGGAGCCT AGATTAATCC 
    TTATTTTCTG CTTCAGATTT GTACAGGAAA AAAACTATTT ATTCGGAGCA 
    ATAATAAGAG AGTAATTGGG GGTGGCCTAA TTAGC

    Gene models with high sequence identity

    1. AT4G30550.1 [+] show detail - Class I glutamine amidotransferase-like superfamily protein
      E-value: 1e-57; Score: 220.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Glutamine amidotransferase type 1 14.313
    HMMPfam Glutamine amidotransferase class-I, C-terminal 0.000000000000038
    HMMPanther GMP SYNTHASE 0.00017
    HMMPanther GMP SYNTHASE-RELATED 0.00017
    Gene3D no description 4.4e-38
    superfamily Class I glutamine amidotransferase-like 2e-40

    See the detailed result >

    AT4G30550.1

    Model type
    Protein coding
    Short Description
    Class I glutamine amidotransferase-like superfamily protein
    Computational Description
    Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: catalytic activity, acyltransferase activity; INVOLVED IN: L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine O-succinyltransferase (InterPro:IPR005697), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G23970.1); Has 7193 Blast hits to 7193 proteins in 1745 species: Archae - 322; Bacteria - 3933; Metazoa - 5; Fungi - 197; Plants - 101; Viruses - 0; Other Eukaryotes - 2635 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR