K08344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08344

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08344

Determination of introduced cDNA(s)

  • J013070D05 - Rice Full-length cDNAs - Original: J013070D05

    full reading [+] show sequence

    Nucleotide sequence: J013070D05 - full reading 
    GCCTGAGGCG CCATTGTTTG CGCTTGAGAT AAATCCTGAG AAAGCCCGAG 
    AAGAGTTTCG TGCAGCAAGT CAGAAGAATG GAGGGACTGG GGTAAAGGAC 
    TTCATGGATG GCATGGGACT GGGAGTGCTT GCTGAGCAGC TGGGGGAGTT 
    AAAACTGGGG GAGTTATTGG ACACACCACC ACCAGGATTG GATGAAGCAA 
    TAGCGATTTC AAAGGTTATG CAATTCCTTG AAGCACAAGA GTATAGCATG 
    TTTAGACGCA TTGTTTTTGA CACTGCTCCA ACGGGCCATA CACTCCGTTT 
    ATTATCCTTG CCAGATTTCC TGGATGCATC TATTGGGAAG ATCTTGAAGC 
    TTAGGAGCAA GATCGCTTCT GCAACATCAG CTATTAAATC AGTTTTTGGA 
    CAAGAAGTTC AACAGCAGGA TGCAGCAAAC AAATTGGAGC AGCTGAGAGA 
    AAGGATGGTC CAAGTGCGAG AACTTTTTCG TGACACAGAA TCAACTGAAT 
    TTATAATTGT GACTATTCCA ACAGTGATGG CAATAAGTGA ATCAGCAAGA 
    CTACATTCTT CCCTAAGAAA TGAAAGTGTT CCCGTTAAGA GACTCATTGT 
    TAACCAAATT CTACCACCTT CGTCATCAGA CTGTAAATTC TGTGCTATAA 
    AAAGAAAGGA TCAAACACGT GCTTTGGATA TGATAAGGAA TGATCCAGAG 
    CTAATGGGGC TGAACTTAAT CCAAGCACCT CTTGTCGACA TGGAAATAAG 
    AGGCGTTCCT GCTCTGAAGT TTTTGGGCGA TATAGTATGG AAGTAACTTC 
    ACAATGGAAA ATACGATAAA CTTCATCACA CCTACTTATT GAAGTGCTTT 
    GCAATGCAAA CTTTGGTAGC TGCAAGTATC AGCATGGATA GAGCTAGAAT 
    GCAAGTGTGC AACTTAGCAG ATGCCCAATC TCATGTGAGT AAGTAGCATC 
    TCGCTGAAGG TTTGCCGGAA TAGCATATAC TAGGGGGATT GTGTTCTAAA 
    AAAAAAGGGG GGGGGATTGG ATCAAGCTGC ACTAATATCA AGTCCATTGA 
    GGCAACATGC CGGTGATATT TCTGCTTCTT TATCCCTTTA ATAGGAGCGA 
    TTCTGAGGGT TTTGAGTCCA TAACTTTGCA CTAAAATTAA TTTTGTTCGT 
    GCATCATGTA AAGTCGGTTA GAGAATGAAG AATGGAGAAA ATCAGACAAC 
    ACTTTTAAGT AAATTTTCTT

    Gene models with high sequence identity

    1. AT3G10350.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 1e-110; Score: 397.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D G3DSA:3.40.50.300 1.49999648196318e-36
    superfamily SSF52540 3.19999899046355e-20
    HMMPanther PTHR10803 4.69998262513189e-48
    HMMPfam ArsA_ATPase 2.29999999999998e-46

    See the detailed result >

    AT3G10350.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: Anion-transporting ATPase (TAIR:AT5G60730.1); Has 2945 Blast hits to 2509 proteins in 789 species: Archae - 176; Bacteria - 2046; Metazoa - 144; Fungi - 222; Plants - 103; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR