K08406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08406

Determination of introduced cDNA(s)

  • J033093O08 - Rice Full-length cDNAs - Original: J033093O08

    full reading [+] show sequence

    Nucleotide sequence: J033093O08 - full reading 
    GATTGTGGCT GCATTAGCCA CCATTGTTAC TGATGTTCTC TACTGCCACT 
    GCTATCCACC TGTGCACTCC ATAGTTTGGC ACAATTCATA AAGGCAGCAG 
    CAGCAGCAGC AGCAGGAGCA GGATGCACTA TCATCTTCTT CTTGTTGTTT 
    TTCTTGCAAA AGGCGGGAAG GCAGAGGCAA AAGGGCGCTA AAAGTTGCGG 
    CCTTTTCTTG CACCCACCTA GTCGCTGGCG TGCACATTAT TAAGCTCTTC 
    CACTTCGGCA CATCCCCGGA TCAATCGGCA ACGGCGTTTC TCTTCATCTT 
    CTTGCTCCGG CGTGGTCTGG TCGCCGGCGT TACTGACGGC GACGGTTTTT 
    GAAGCTGCAT TCAAGTAGGG ATAGGATGGC GCCAGCGATG GCTCTGAGGT 
    TGCTGGTGGT GGTGGCGGTG GCGGCGGTGG TGTCCTGCGC CGTCGCCGCC 
    GATGAGGGGA GCGTCGTCGA GGTGTGGCCA ATGCCGGCGA CGGCGAGCAA 
    AGGCGGGCAG ACGCTGCACG TCAGCAGGGA GCTCAGGATG ACGGCGGAGG 
    GGAGCAAGTA CGCCGACGGG GAGGCCATCC TGAAGGACGC GTTCCAGAGG 
    ATGGTGACGC TGATAGAGCT GGACCACGTC ATCAATGGCA GCTCCCAGGG 
    CTTGCCGCTG CTCGCCGGTG TGAATGTCGT CGTGCATTTG CCCGGCGATG 
    AGCTCAACTT CGGGGTGGAT GAATCATACA ATTTGTCAGT GCCTGCAACT 
    GGAAGTCCAA TTTATGCTCA AATTGAGGCC CAAACAGTTT TTGGAGCACT 
    TCATGCCTTG GAGACGTTTA GCCAATTGTG TAACTTTGAT TTCACCTCAA 
    GGTTAATTGA ACTTCAGTCT GCCCCTTGGA GCATCACGGA CATGCCCAGA 
    TTTCCTTATC GAGGGCTTCT TATTGATACT TCAAGGCATT ACCTTCCTGT 
    CCCAGTAATA AAAAGCGTAA TCGATTCGAT GACCTACAGC AAGTTGAATG 
    TTCTTCATTG GCATATCGTG GATGAACAGT CATTTCCTAT AGAAATACCT 
    TCATACCCAA AATTATGGAA TGGTGCATAC TCTTACTCAG AGAGATATAC 
    AATGGATGAT GCTATCGACA TTGTTCAGTA TGCTGAACGA CGAGGTGTCA 
    ATGTCTTAGC TGAGATTGAT GTTCCTGGCC ATGCTCTCTC ATGGGGTGTT 
    GGTTATCCGT CGTTGTGGCC ATCAGCTACT TGTAAAGAAC CACTTGATGT 
    CAGCAGCGAA TCTACATTCC AAGTGATTAA TGGAATTCTT TCAGATTTCA 
    GCAAGGTTTT TAAGTTCAAG TTTGTCCATT TGGGAGGTGA TGAGGTCAAT 
    ACAAGTTGCT GGACTTCCAC ACCACGCGTT AAAGCATGGT TGGCCCAACA 
    TGGTATGAAA GAATCTGATG CCTACAGATA TTTTGTATTG AGAGCTCAAA 
    AGATAGCAAA ATCACATGGC TACGAAGTTA TTAACTGGGA AGAAACCTTT 
    AACAACTTTG GAGACAAACT AGACCGCAGA ACTGTGGTGC ATAACTGGCT 
    TGGAGGTGGA GTTGCAGAGA AAGTTGTTGC TGCTGGTTTG AGATGCATTG 
    TGAGCAACCA GGATAAGTGG TACCTAGATC ACTTGGAAGT TACATGGGAT 
    GGATTTTATA TGAATGAACC ACTGAGAAAT ATCAAGAACC CGGCACAGCA 
    GAAGTTGGTT CTTGGTGGTG AGGTATGCAT GTGGGCTGAA CACATAGATG 
    CGTCTGACAT TCAGCAAACC ATTTGGCCAC GTGCTGCAGC AGCTGCAGAG 
    CGGTTGTGGA CTCCGTTTGA GAAGCTTTCA AAGGAGTGGG AAATAGCAGC 
    GCTCAGCGCA AGACTGGCAC GCTTCAGGTG CTTGCTGAAT CATAGAGGGA 
    TCGCTGCTGG ACCGGTAACT GGTTATGGAC GTTCCGCGCC AGCAGAGCCA 
    AGCTCCTGTA TAAAGCAGTA GGATATCCAA AGCAGATAAA TATTATTATT 
    ATTATTATTC ATATTGGACT GAAAATCATT TCAGACACCC ATTTAACCGC 
    TGTAAGCAGA AGCAGTCAAA GGAAAAGGCT GGGGCCAATG TAACTGAACT 
    CTGAGTTACA AGAGAGTGTT TCAATAATAT TGCATTCTCA TTTTCATGTA 
    GT

    Gene models with high sequence identity

    1. AT1G65590.1 [+] show detail - beta-hexosaminidase 3
      E-value: 0; Score: 681.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Glycoside hydrolase, family 20 5.8e-142
    superfamily Glycoside hydrolase, catalytic core 4.1e-102
    superfamily beta-N-acetylhexosaminidase-like domain 8e-29
    Gene3D no description 5.3e-24
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.2e-108
    FPrintScan Glycoside hydrolase, family 20 1.2e-53
    FPrintScan Glycoside hydrolase, family 20 1.2e-53
    FPrintScan Glycoside hydrolase, family 20 1.2e-53
    FPrintScan Glycoside hydrolase, family 20 1.2e-53
    FPrintScan Glycoside hydrolase, family 20 1.2e-53
    FPrintScan Glycoside hydrolase, family 20 1.2e-53
    FPrintScan Glycoside hydrolase, family 20 1.2e-53
    HMMPfam Glycoside hydrolase, family 20, catalytic core 3.4e-90
    HMMPfam Beta-N-acetylhexosaminidase, subunit a/b 6.7e-12

    See the detailed result >

    AT1G65590.1

    Model type
    Protein coding
    Short Description
    beta-hexosaminidase 3
    Curator Summary
    Encodes a protein with beta-hexosaminidase activity. Located on the plasma membrane.
    Computational Description
    beta-hexosaminidase 3 (HEXO3); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase, subunit a/b (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1); Has 3849 Blast hits to 3760 proteins in 723 species: Archae - 6; Bacteria - 2490; Metazoa - 475; Fungi - 225; Plants - 125; Viruses - 0; Other Eukaryotes - 528 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR