K08413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08413

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08413

Determination of introduced cDNA(s)

  • J013049M24 - Rice Full-length cDNAs - Original: J013049M24

    full reading [+] show sequence

    Nucleotide sequence: J013049M24 - full reading 
    GGAAGAGAAT ATCTGCAGCT TGATCAGTTC CAAAACTGAG ATATATCTGC 
    AGCTTGATCA GTTCCAAAAC TTTAGCTGGG CACGCACTAC CGGCAGCAGT 
    TCAAGGACAA ACCAATTTGA AGGCGGCTAG CGCCAGCACA GGCATGCCGA 
    TCTCGCATGA GCTGGGCGAG CCTGACGAAA GCTTCTACAA TCTATGGAAG 
    GAAGAGTGTG AAGAACTGTG GGAGGAAGAG GACGAACTGT GGGGGGACGA 
    AGATGTTGAG GAGGAGCTGT CGCTGCGTCA CCCTGGGTTC AACAAGTGGA 
    CCGTCCAGCA GGGTGCTGCA GGCGGGGACC ATATTCGCGC CAAGGACAAG 
    AACTTTTACT GCTTTGAGGT CCAAGTTCAC TTCACTGGAG AACTAGTTGA 
    CGGTACGCAG TTCGTGTCAA GCCGAGAAAA TGACATTCCA GAGAGGTTTA 
    TACTGGGGCA AGAGGATGTG ATGCATGGTT TCAACTTAGC TGTCAGTTCG 
    ATGCAACCAG GGGAGAAAGC TATATTCACT ATCCCTTCAG CGTTAACCAT 
    GACAAAAGCT GGCTCCCCTG CTAGCATCCC GTCAAACATA CCTCCCAACC 
    AAACACTACG GTTTGAGATT GAGCTCATCG CCATGTTTAC TATAATTGAC 
    ATTTTCAAAG ATGAAGGCAT ATTGAAAAAG ATTGTCAAGA ACGCAGAACC 
    CGACAGAAAA CAATCTCACT CAAGTGATTT TGTATTTGGT ACATTCCTTA 
    TCTACCAATT CCAGTTGTAC ATGGAAATTG ATTTCTTCAT TAGCTCAATA 
    TTTCTTTTGC TATTTACTTT TCTTTGACTT TTGATCTAGT TTAGTTTCTG 
    TTCCTTAATT CTAAAACCAT GTAAACCTCG TTTGTTAACC CTAATAAAAG 
    ATAAAACCCA ACTTGATGTC CAGT

    Gene models with high sequence identity

    1. AT5G48570.1 [+] show detail - FKBP-type peptidyl-prolyl cis-trans isomerase family protein
      E-value: 5e-18; Score: 88.60

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.8e-19
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 5.1e-18
    superfamily FKBP-like 3.2e-23
    HMMPanther PEPTIDYLPROLYL ISOMERASE (ROF1) 1.1e-31
    HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 1.1e-31
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 19.796

    See the detailed result >

    AT5G48570.1

    Model type
    Protein coding
    Short Description
    FKBP-type peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: rotamase FKBP 1 (TAIR:AT3G25230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR