K08424

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08424

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08424

Determination of introduced cDNA(s)

  • J023143D06 - Rice Full-length cDNAs - Original: J023143D06

    full reading [+] show sequence

    Nucleotide sequence: J023143D06 - full reading 
    GAGCGTCGCC TAACCCTAGC TAAACCCCCC TTCTCCCTTG CGCCTCCGCT 
    TCGCGAGCCT CATCTCCTCG ATCTCTTTCG ATTCAGTGGA AAACCTAGGA 
    GACCGGCGCG GCATGGCGGA GTCGGGCTCG TCGGGCCTGG AGGAGAAGCT 
    GGCGGGTCTC TCCGCGGGCT GCGGCGAGGA GCCGCAGCAG CTCTCGAAGA 
    ATGCCAAGAA GAGGGAGGAG AAAAGGAAGA AGCAGGAGGA GGAGCGCCGG 
    TTGAAGGAGG AAGAGAAGAA GAAGAAGGCC GCTGCAACAG CAGCTGCTAG 
    TGGAGAGCCC CCGAAGGAAT CTGCCGCCGA CGATGAGGAA ATGGATCCCA 
    CTCAATATTA TGAGAATCGC CTCAAGGCAC TTGATTCACT CAAGGCCACG 
    GGTGTAAACC CCTATCCCCA TAAGTTCCTG GCTAATATTA CCGTAGCCGA 
    TTATATTGAG AAATACAAGA GCATGAATGT TGGGGATAAG CTTGTTGACG 
    TCACCGAGTG CCTAGCAGGG AGGATCATGA CCAAGAGAGC GCAATCTTCC 
    AAGCTCTTAT TTTATGATCT TTATGGTGGT GGTGAGAAAG TTCAAGTTTT 
    TGCTGATGCC AGGACCTCAG AGTTGGAAGA TAATGAATTC ATTAAGTTTC 
    ACTCTACTCT GAAACGAGGT GATATTGTTG GTGTATGTGG TTATCCAGGA 
    AAGAGCAAGA GAGGGGAGCT CAGTATATTC CCAAAGAAAA TTGTTGTGCT 
    CTCCCCATGC CTTCATATGA TGCCTCGACA GAAGAGTGAG GGAAGTGCTG 
    TTCCCACTCC ATGGGCTCCA GGAATGGGTA GGAACATCGA AAAGTATGTT 
    TTGAGGGACC AGGAAACCCG ATATCGTCAA CGATATCTTG ATCTCATGGT 
    AAACCATGAA GTGAGGCATA TTTTCAAGAC AAGATCAAAA GTTGTCTCTT 
    TTATTCGGAA ATTTCTTGAT GGTCTTGACT TTTTAGAGGT GGAGACTCCA 
    ATGATGAACA TGATTGCAGG TGGAGCAGCT GCAAGGCCTT TTGTCACACA 
    TCATAATGAG TTAAACATGA GGCTTTATAT GCGTATTGCT CCTGAGCTCT 
    ATCTGAAGGA ATTGGTTGTT GGGGGGCTGG ATCGTGTTTA TGAAATTGGG 
    AAGCAGTTCA GGAATGAAGG AATTGACCTG ACGCACAATC CTGAATTCAC 
    AACATGTGAA TTTTATATGG CATATGCAGA TTACAATGAC TTGATAGAGC 
    TTACTGAAAC CATGTTATCT GGTATGGTTA AGGAGTTGAC AGGTGGCTAC 
    AAGATTAAAT ATCATGCTAA CGGAGTTGAG AAACCACCAA TAGAGATTGA 
    TTCCACACCT CCCTTCAGAA AGATAGACGT GATTGAAGAA TTAGAGGCTA 
    TGGCTAAACT CAATATACCT AAAGATCTCT AAGTGATGAA GCAAACAAGT 
    ATTTGATAGA TGCCTGTGCC AAATATGATG TCAAATGCCC ACCTCCCCAG 
    ACTACAACAC GGTTGCTTGA TAAGCTAGTT GGCCATTTCT TGGAGGAGAC 
    ATGTGTGAAT CCCACGTTTA TTATCAACCA TCCAGAGATA ATGAGTCCAT 
    TGGCAAAGTG GCATAGGTCT CGACCTGGAT TGACTGAGAG GTTTGAGCTC 
    TTTGTTAACA AGCATGAGGT GTGCAATGCA TATACAGAGT TAAATGATCC 
    TGTTGTTCAG AGGCAACGGT TTGAGGAACA ACTAAAGGAT CGTCAATCTG 
    GTGATGATGA AGCTATGGCA TTGGATGAAA CATTCTGCAC AGCCCTTGAG 
    TATGGCCTAC CACCGACTGG TGGTTGGGGA TTGGGAATTG ATCGCCTTAC 
    AATGTTGCTG ACTGATTCTC AGAATATCAA GGAAGTTCTT CTATTCCCGG 
    CTATGAAGCC TCAAGATTAG ATATGTCCAC AAAGCAGGAA CCTGTCAGAA 
    GGATTAAAGC AGACTGAATG CTGACTGAGA GGATTTCAAT TGGCCCTCGA 
    GATGGAGGAT TTGAAGGAAA CTTATAATTT TGTTTTAATT GTGCATGTGA 
    GGTTTCCATG TCCTATTGTA CTTTATTTTT GGAGAACATT GGTGGTCAGT 
    TAAGCAAACA GTTAATCTCG CTGCAAAGAT ATCAAGCGTA ACTTATAAGA 
    TGACTTAAGT TTGT

    Gene models with high sequence identity

    1. AT3G11710.1 [+] show detail - lysyl-tRNA synthetase 1
      E-value: 0; Score: 300.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 10.309
    ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 16.825
    HMMPfam Aminoacyl-tRNA synthetase, class II (D/K/N) 1.7e-39
    HMMPfam Aminoacyl-tRNA synthetase, class II (D/K/N) 2.2e-48
    HMMPfam Nucleic acid binding, OB-fold, tRNA/helicase-type 1.5e-12
    Coil coiled-coil 0
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 2.4e-28
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 2.4e-28
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 2.4e-28
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 2.4e-28
    HMMPanther Lysyl-tRNA synthetase, class II, C-terminal 5.7e-89
    HMMPanther Aminoacyl-tRNA synthetase, class II (D/K/N)-like 5.7e-89
    HMMPanther Lysyl-tRNA synthetase, class II, C-terminal 6.2e-114
    HMMPanther Aminoacyl-tRNA synthetase, class II (D/K/N)-like 6.2e-114
    superfamily Class II aaRS and biotin synthetases 2.6e-57
    superfamily Class II aaRS and biotin synthetases 9e-67
    superfamily Nucleic acid-binding, OB-fold-like 1.7e-41
    Gene3D no description 2.2e-48
    Gene3D Nucleic acid-binding, OB-fold 4.8e-37
    Gene3D no description 2.7e-57

    See the detailed result >

    AT3G11710.1

    Model type
    Protein coding
    Short Description
    lysyl-tRNA synthetase 1
    Computational Description
    lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR