K08425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08425

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08425

Determination of introduced cDNA(s)

  • J023107K01 - Rice Full-length cDNAs - Original: J023107K01

    full reading [+] show sequence

    Nucleotide sequence: J023107K01 - full reading 
    GATCCCCTTT TCCCTTCTCC TCCACCCCCC CCCCCCAACC ACCTCACCGC 
    CGACGACCTC ATCCTCGTCG GCGCCGTCGG ATTCACCAGC GAGGGAGGTT 
    GCGGCGGCGG CGGAGAGCGC GAGGGAGGAA AGCGGGGGAG GTGACCGCCA 
    GCGATGGGGC AGCAGTCGCT GATCTACGCG TTCGTGGCGA GGGGCACGGT 
    GGTGCTCGCC GAGTACACGG AGTTCACCGG CAACTTCACC ACCATCGCGG 
    CGCAGTGCCT CCAGAAGCTC CCCGCGAGCA ACAACAAGTT CACCTACAAC 
    TGCGACGGCC ACACCTTCAA CTACCTCGTC GAGGACGGAT TCACATACTG 
    TGTAGTTGCT GTTGAATCAG TTGGGCGACA AATCCCCATT GCTTTCCTTG 
    ACAGAGTCAA GGAAGATTTC ACCAAAAGAT ATGGTGGTGG GAAAGCAGCT 
    ACTGCTGCAG CAAACAGCCT CAACCGAGAA TTCGGATCAA AACTTAAGGA 
    GCACATGCAG TATTGTGTGG ACCACCCTGA GGAAATCAGC AAGCTTGCAA 
    AGGTCAAAGC ACAAGTCTCA GAGGTCAAAG GAGTTATGAT GGAAAACATT 
    GAGAAGGTTC TTGACCGTGG TGAGAAGATT GAACTGCTTG TCGACAAGAC 
    TGAAAACCTG AGATCTCAGG CACAAGATTT CAGACAGCAG GGTACAAAGG 
    TGCGGCGAAA GATGTGGTTA CAAAACATGA AGATCAAGCT GATCGTCCTG 
    GGCATCATCA TCGCGCTCAT CCTCATCATC ATCCTGTCCG TGTGCCATGG 
    CTTCAAGTGC AAGTGAGGGT GTTGGCTTCC CAGTCCTCCA CATTCACCTT 
    GCCCCCCATA ATACCGCCTA TTCCTGGCGA AAAAAAAGAC CATATGTTTT 
    TTTTTGTTCT GTTAGTCATG AGTCCTGCCC CGATTCTTGG GTGTTCGAGT 
    GTCCCTGATG TCGCGCTTGA TTGGTGTCGG ATAGTGACTG GGTTTATGGG 
    TCGGAGTCCC GTGTATTTTT GGACGCTATT CATGTATAGC CTGTATGCTA 
    CCCTCTTTTC GCTCTGCTAT ATGAGTAGTA GGTGTTACTA CGTTTGTTCC 
    CCCACTTTAT ATCTTCTCTT ACTCCACAGC TAAATCTTAG TAAGAAGGAA 
    CAACTTGCAT TTCC

    Gene models with high sequence identity

    1. AT2G32670.1 [+] show detail - vesicle-associated membrane protein 725
      E-value: 3e-102; Score: 369.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Longin 28.701
    ProfileScan Synaptobrevin 19.44
    PatternScan Synaptobrevin 0
    Gene3D no description 8.8e-26
    Coil coiled-coil 0
    FPrintScan Synaptobrevin 7e-21
    FPrintScan Synaptobrevin 7e-21
    FPrintScan Synaptobrevin 7e-21
    superfamily Longin-like 4e-31
    HMMPanther VAMP-7 6.7e-132
    HMMPanther SNARE PROTEINS 6.7e-132
    HMMPfam Synaptobrevin 7.6e-35

    See the detailed result >

    AT2G32670.1

    Model type
    Protein coding
    Short Description
    vesicle-associated membrane protein 725
    Curator Summary
    member of Synaptobrevin -like protein family
    Computational Description
    vesicle-associated membrane protein 725 (VAMP725); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 726 (TAIR:AT1G04760.1); Has 2451 Blast hits to 2449 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 984; Fungi - 445; Plants - 609; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR