K08438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08438

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08438

Determination of introduced cDNA(s)

  • J033068E17 - Rice Full-length cDNAs - Original: J033068E17

    full reading [+] show sequence

    Nucleotide sequence: J033068E17 - full reading 
    GTCGGAGCCC CTGCCCCCTC TCGGGCGGCG CGGCGGGGAC CGGGGCTCAC 
    CGCGGCCATG CGCTGTTCTT GCTATCCCTC TCGTCAGTTT GTGCCCTCAC 
    CCTGATGATT TCCGTTTCAC TAGCCTTGCA CTTCTTGTCT TCTTCCACTC 
    AACAGGTTGG CGCTAGGTTT TGCCGATTGG GGATGAACTC GTGACGAAAT 
    TGCAATGTGG GGCTCTCTCT CGGTAATGGA TTGGAGAAGT GATGAACGGC 
    GAGCTTAAAC TTATGGCTTC CTATGTGAGC AAGCTTAAGT TCATCTTGCA 
    AAAAGATCAG CAGCAGGAGC CCCATACTGC GAACCTTCTA GTCCTACTTG 
    GGAGTAGCAA TCAGGACAAA AGAAATGGCC TCTCACAGGG AGAAAACAGA 
    ATGGACACTT GTACCAGAAA GAAGCCAAGA AGATACCAAC TCCTCACCAT 
    GCAACAAAAA GAAACGCTTA ATCGTGCATT TCAATCATGT CCGAACCCTG 
    ATAGAAATGA CTTGAAGAAG TTGGCCAAGG AACTAAACAT GACTGAGACC 
    CAAATCAAAT ATTGGTTCCA GAACTGCAGG ACAAAGATGA AGAAATTCAA 
    GAACAATGAG GAGCGCAAAC TACTGCAGAA GGAGAATGAG GAGCTAAAGA 
    AGGAGAATGC AGAGTTGAGA AATAGGATGA AGAACTCAAC ATGCCGCGCT 
    TGTGACCTCC CTTTGTTCCA TATAGATTGC CGTCATTGGG AGAATCCAAT 
    GCTCAACAAG GGTAATCATG GCGTTACAAG TAATCTCATT CCTCAGGCAG 
    TGTCATCCTT GCTCCCCAGC TCAAGTGGTT TTGTAGCTTC AGGCTCCAAT 
    CTTAGTAGCA ATGCTGTGCT CATGCCCGTA TCTGCCATGC CATCATCAGT 
    TTTGCAGCCT GCTCCAGCCG TCTCTGGTGC CAATTTTCCC ATCTTGCACA 
    ATCTATCTGC CAATGCAAAT GATGGCTATA CGGAAAAAAA CGTACTTCTT 
    GATCTGGCGA ACCGTGCAAT GGAAGAGTTC TTTAGTCTAA TGAAGGAGAA 
    TGAGTCTCTT CTTGTCAAAA AAAAGGAGAA TGGGCCTCTC TGGCTCCCAC 
    ACATGGATAT TCTGGGAGTC GAATCACTTA ACTACCAGGA ATACCTTGCA 
    AAATCCAGGA CGATTGGACA AAAACCTGTT GACTTCAAAG TGGTCGTCAC 
    CAGGGACACT GCCATTGTCA ATGGTAGCTG TGTTGACCTC GTCAAAAGCC 
    TTTTGGATGC TAACCGCTGG AGAGAGTTGT TTCCAGGCAT CGTGGCAAGT 
    GCAAACACCA CCAAGATCAT CTCTACTGGG CCCTCTAACT TGCACGACGG 
    GTTGCTTCAA TTGATGCGTG CAGAGCTCCA GGTAATGTCA CCTGAAGTCC 
    CAGTTTGCGA TGTGACATTC TTGAGGCAGA GTGTGCAGTT TGGAAGTGGA 
    CTGTGGTGTG TGGTTGATGT GTCTATTGAT ACCATCCTTC CTGGAGAGAG 
    TAAAACAGCT CAGTCCAGTG TGCAGACCAG CAGTACAGCT GCCAGACGCA 
    TGGAAGTCAG GCTGTTGCCA TCGGGCTGTG TTATTGAAGA AATGGAGAAT 
    GGCTATTCCA AGGTGACCTG GATGGTGCAT GCAGCTTATG ATGAGAGAGC 
    AGTGCCAGTG CTTTATCATT CACTTCTCCG CTCTGCAAAA GCCCTTGGTG 
    CGTGCCGCTG GGTAGCATCA CTCCAGAGAC ACAGCCAGTT CCTTTCCGGC 
    CTGCACAAAT ACATCTTTTG TCCTGACAGC ACAAAAGTGG TGATGCGAAG 
    AAAAGTCCTG TACCTGGTGA AGCAGATGAC GAGCAGCTTC ACAGGCCTAT 
    TTGCGTCGAT GTCTAAGGCC ACGCTGCAAG ATGGTGATGA TACTCACTTC 
    GCGCATCAGA TAGTTGGTGG TGCAACAGGT GAACCTGCCG GACTGCTGCT 
    GAGCGCCACC ACAACCATAT GGCTCCCCGG CGTGAACCCG AGGCACGTGT 
    ATGACCACCT GCGTGATGAG CAGTGCCATG GTGAATGGCG CTGCCTCCTC 
    GGTGAGCAGC TGCATCAGGG CAATGCCTTG CCGTATGGTG CCCCCCTGAA 
    TGGTGAGACC GTGCCAGAGT TCTATCGCAT GGTGAACGGG CTGCATGAAG 
    GGCATGCTAT CTCCCTGATC AGCCCCAGAG AAATGGGTGG TAACATAAGC 
    AACACTCTGC TCCTGCAAGA GGCAAGAACT GATCTTTCTG GCTCCCTCAT 
    AGTTTACGCC AGGACAGATG TGAACACCGT GCATTCCATC ATGAACAGTG 
    GCCTCAACCC TGCCACCGTC TTCCTCGTAT CCTCTGGATG TGCCATTCTT 
    CCTGATTGCC TGGAATCATT CCCTCTACAC CCAGCTGCAA CTGC

    Gene models with high sequence identity

    1. AT4G00730.1 [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
      E-value: 3e-79; Score: 293.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homeobox 15.742
    ProfileScan Lipid-binding START 25.265
    superfamily Homeodomain-like 1.9e-18
    Coil coiled-coil 0
    HMMSmart Homeobox 1.9e-17
    HMMSmart Lipid-binding START 2.8e-12
    HMMPfam Lipid-binding START 2.3e-31
    HMMPfam Homeobox 2.8e-17
    Gene3D Homeodomain-related 4e-15
    HMMPanther HOMEOBOX PROTEIN 1.5e-14

    See the detailed result >

    AT4G00730.1

    Model type
    Protein coding
    Short Description
    Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
    Curator Summary
    Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
    Computational Description
    ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 12660 Blast hits to 12608 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9962; Fungi - 223; Plants - 2228; Viruses - 1; Other Eukaryotes - 246 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR