K08444

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08444

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08444

Determination of introduced cDNA(s)

  • J013070M10 - Rice Full-length cDNAs - Original: J013070M10

    full reading [+] show sequence

    Nucleotide sequence: J013070M10 - full reading
    GATACAGCCT AGAACAACTG CTTGCCAAAA AAGGAAAAGA AAAGAAAACA 
    CTTAGTGCAG AAACTGGGAA TTGCAATGGC GGGAGCAAGA TCCGTTGGTT
    CTCTCCCAGT GCCTAATGTG CAGGCGCTTG CAGAAATTTG CAATGATCCA
    GATGAACACA TACCTGAAAG GTACATCAGA CCAGAGGCTA GTTCTGAGGA
    GGTCATCAAC AACTACCAAG GTGACATGGC GATTCCGATC ATCGATCTCA
    AGAAATTGCT TTGTCCGCAA TCATCAGAAG AGGAGTGTGT GAAGCTGAGA
    TCTGCCTGCC AGTATTGGGG GTTCTTTCTG CTCATTAACC ATGGAGTGCC
    AGATGAAGTG ATTGCAAACC TGAAGAGAGA CATTGTTGAT TTCTTTAGCC
    AGCCACTGGA CACCAAGAAG GAGTACACAC AGCTACCGAA TAGCCTAGAA
    GGCTATGGAC AGAGCTTTGT TTTCTCTGAG GACCAGAAAC TTGACTGGGC
    AGACATGCTG TATCTTCATG TCCATCCTAG CGATTCAAGG GACCTAAGGT
    TCTGGCCCAC TTCTCCAGCA TCTTTCAGGC AATCCATTGA TGCATACTCA
    TCAGAGACTA AAAGCCTGGC ACTCTGCTTG TTTGAGTTCA TGGCTAAGGC
    TGTGGGCGCT AAGCCAGAGT CACTTTTAGA TTTATTTGAA GAGCAGCCTC
    GAGGCTTAAG GATGGCCTAT TACCCACCAT GCCGGCAAGC TGACAAGGTG
    ATGGGCCTTT CGCCACACTC TGATGCGGGT GGCCTGACAC TGCTGCTCGA
    GATTAACAAT GTGCAGGGCC TGCAGATCAA GAAAGATGGC AAGTGGTTCT
    CCATAGATGC TCCAAATGGT GCACTTATTG CTAACATTGG CGACACACTT
    GAGGTAATGA CCAATAACAA ATTATGCTTT CACATGTCGA AGGACCTTGA
    TGTATTTGGA TGAGTTCAAT AAAAGCTCCT ATTATCTAGA AAACTTGTCA
    AAGCACCAAA CAAAATACCT AAGTTCAAAT TATTTATATT CTTGAGTC

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 8e-67; Score: 251.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 2.4e-13
    superfamily Clavaminate synthase-like 2.4e-71
    Gene3D no description 8.7e-71
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 7.4e-144
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 7.4e-144

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR