K08450

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08450

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08450

Determination of introduced cDNA(s)

  • J023027E20 - Rice Full-length cDNAs - Original: J023027E20

    full reading [+] show sequence

    Nucleotide sequence: J023027E20 - full reading
    GATCGTCATC ATCTCGTCCC CACTCTTCCC GGCGCGGCGG TTGCTCTCCA 
    GCCATGGCCG CCGCCGCCGC CGCCGCCGTC GCCTGCGGCA TGTCTACGTC
    CTTCCTCATC CGCCTCTCGC CTTCGCCGCC GGCGTCTTCC CACGTGCCTC
    TCCCTCGGTC TCCGGCTTCG TCGGCGCGCC CGCGGCGAGC GTCTTCCGTC
    TCCCTCTCCA CCGCGCCTAG GCCGAGGGCA CGCGCCGCCG GCTCCGACTC
    TCCCTCCAAC TTTGGAGGTC AAACATCACT GATGCCACCA TTCAGCCTTA
    TGCTTGATGA AGGCTCTAGA TCTAAAAAGC CATATAGATG GCAAAGGGTG
    TTGCTTAAAG TAAGTGGGGA GGCTCTTGCT GGAGATCACA CAGAAAATAT
    TGATCCAAAG ATCACGATGG CAATTGCAAG AGAGGTTGCT TCTGTCACCA
    GACTAGGTGT AGAGGTTGCT ATTGTTGTTG GTGGCGGCAA TATCTTCCGC
    GGGGCCTCTT GGGCTGGATG TAGTGGACTC GACCGCTCAT CAGCAGATTA
    CATTGGCATG TTGGCTACTG TGATGAATGC CATATTTCTT CAAGCAACAA
    TGGAGAGCAT TGGAATACCA ACCCGTGTCC AAACTGCATT TCGTATGTCA
    GAAGTTGCAG AACCATACAT ACGCCGAAGA GCTGTCAGGC ATTTAGAGAA
    AGGAAGAGTT GTTATATTTG CTGCTGGTAC AGGGAACCCA TTCTTTACAA
    CTGATACAGC TGCTGCTCTT CGTTGTGCAG AAATCAATGC AGAGGTAGTA
    CTTAAGGCAA CAAATGTTGA CGGTGTGTAC GACGCAGACC CCAAGCGTAA
    CCCAAATGCC CGCCTTCTTG AGGCTGTGAG CTACCATGAG GTGCAAACAA
    GAGACCTCTC AGTAATGGAC ATGACTGCCA TTACGCTATG CCAAGAAAAC
    AACATTCCTG TTGTCGTGTT TAATTTGCAA AAACCTGGAA ATATTGCGAA
    AGCTATTGTT GGTGAGAAGG TTGGCACGTT TATAGGCTGC ACAAAAGATC
    AGGACCAGAT TGTGGGGAAT GCACTGGATC AAGAAAGAAG ATTGGTGAAC
    GAGTTATGAT TTCACTGGAG CTCTCTGTCG CTAGCTGTGT AGCTGCATTG
    CCTATTGCTT GGTAACATGT GGATCTCTAG AGTTTTTAGG CTAGAATAGC
    TTATCCAAAT CCTGGTTCCT TGTACAACCT TTGAGCAAAA ATAAAAAAAC
    CAATGGTAAC AGAGATTTTC CAGCTGATAT AGCTGCTATG TTGTCATACT
    ATGTACAATG GAATCTAGAG CAATCTGATA AATCACATTT ATATCTTAAA
    ATCATTGCAT GTGGCATGTA TGATGTCTTC ACCT

    Gene models with high sequence identity

    1. AT3G18680.1 [+] show detail - Amino acid kinase family protein
      E-value: 4e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aspartate/glutamate/uridylate kinase 1.4e-30
    Gene3D Aspartate/glutamate/uridylate kinase 4.6e-89
    HMMTigr Uridylate kinase, bacteria 1.6e-133
    superfamily Aspartate/glutamate/uridylate kinase 1.7e-54
    HMMPanther ASPARTATE KINASE 0.000001
    HMMPanther ASPARTATE KINASE 0.000001

    See the detailed result >

    AT3G18680.1

    Model type
    Protein coding
    Short Description
    Amino acid kinase family protein
    Computational Description
    Amino acid kinase family protein; FUNCTIONS IN: uridylate kinase activity, UMP kinase activity; INVOLVED IN: cellular amino acid biosynthetic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Uridylate kinase, bacteria (InterPro:IPR015963); BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 10647 Blast hits to 10647 proteins in 2814 species: Archae - 356; Bacteria - 8071; Metazoa - 2; Fungi - 40; Plants - 182; Viruses - 0; Other Eukaryotes - 1996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR