K08450

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08450

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08450

Determination of introduced cDNA(s)

  • J023027E20 - Rice Full-length cDNAs - Original: J023027E20

    full reading [+] show sequence

    Nucleotide sequence: J023027E20 - full reading 
    GATCGTCATC ATCTCGTCCC CACTCTTCCC GGCGCGGCGG TTGCTCTCCA 
    GCCATGGCCG CCGCCGCCGC CGCCGCCGTC GCCTGCGGCA TGTCTACGTC 
    CTTCCTCATC CGCCTCTCGC CTTCGCCGCC GGCGTCTTCC CACGTGCCTC 
    TCCCTCGGTC TCCGGCTTCG TCGGCGCGCC CGCGGCGAGC GTCTTCCGTC 
    TCCCTCTCCA CCGCGCCTAG GCCGAGGGCA CGCGCCGCCG GCTCCGACTC 
    TCCCTCCAAC TTTGGAGGTC AAACATCACT GATGCCACCA TTCAGCCTTA 
    TGCTTGATGA AGGCTCTAGA TCTAAAAAGC CATATAGATG GCAAAGGGTG 
    TTGCTTAAAG TAAGTGGGGA GGCTCTTGCT GGAGATCACA CAGAAAATAT 
    TGATCCAAAG ATCACGATGG CAATTGCAAG AGAGGTTGCT TCTGTCACCA 
    GACTAGGTGT AGAGGTTGCT ATTGTTGTTG GTGGCGGCAA TATCTTCCGC 
    GGGGCCTCTT GGGCTGGATG TAGTGGACTC GACCGCTCAT CAGCAGATTA 
    CATTGGCATG TTGGCTACTG TGATGAATGC CATATTTCTT CAAGCAACAA 
    TGGAGAGCAT TGGAATACCA ACCCGTGTCC AAACTGCATT TCGTATGTCA 
    GAAGTTGCAG AACCATACAT ACGCCGAAGA GCTGTCAGGC ATTTAGAGAA 
    AGGAAGAGTT GTTATATTTG CTGCTGGTAC AGGGAACCCA TTCTTTACAA 
    CTGATACAGC TGCTGCTCTT CGTTGTGCAG AAATCAATGC AGAGGTAGTA 
    CTTAAGGCAA CAAATGTTGA CGGTGTGTAC GACGCAGACC CCAAGCGTAA 
    CCCAAATGCC CGCCTTCTTG AGGCTGTGAG CTACCATGAG GTGCAAACAA 
    GAGACCTCTC AGTAATGGAC ATGACTGCCA TTACGCTATG CCAAGAAAAC 
    AACATTCCTG TTGTCGTGTT TAATTTGCAA AAACCTGGAA ATATTGCGAA 
    AGCTATTGTT GGTGAGAAGG TTGGCACGTT TATAGGCTGC ACAAAAGATC 
    AGGACCAGAT TGTGGGGAAT GCACTGGATC AAGAAAGAAG ATTGGTGAAC 
    GAGTTATGAT TTCACTGGAG CTCTCTGTCG CTAGCTGTGT AGCTGCATTG 
    CCTATTGCTT GGTAACATGT GGATCTCTAG AGTTTTTAGG CTAGAATAGC 
    TTATCCAAAT CCTGGTTCCT TGTACAACCT TTGAGCAAAA ATAAAAAAAC 
    CAATGGTAAC AGAGATTTTC CAGCTGATAT AGCTGCTATG TTGTCATACT 
    ATGTACAATG GAATCTAGAG CAATCTGATA AATCACATTT ATATCTTAAA 
    ATCATTGCAT GTGGCATGTA TGATGTCTTC ACCT

    Gene models with high sequence identity

    1. AT3G18680.1 [+] show detail - Amino acid kinase family protein
      E-value: 4e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aspartate/glutamate/uridylate kinase 1.4e-30
    Gene3D Aspartate/glutamate/uridylate kinase 4.6e-89
    HMMTigr Uridylate kinase, bacteria 1.6e-133
    superfamily Aspartate/glutamate/uridylate kinase 1.7e-54
    HMMPanther ASPARTATE KINASE 1e-06
    HMMPanther ASPARTATE KINASE 1e-06

    See the detailed result >

    AT3G18680.1

    Model type
    Protein coding
    Short Description
    Amino acid kinase family protein
    Computational Description
    Amino acid kinase family protein; FUNCTIONS IN: uridylate kinase activity, UMP kinase activity; INVOLVED IN: cellular amino acid biosynthetic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Uridylate kinase, bacteria (InterPro:IPR015963); BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 10647 Blast hits to 10647 proteins in 2814 species: Archae - 356; Bacteria - 8071; Metazoa - 2; Fungi - 40; Plants - 182; Viruses - 0; Other Eukaryotes - 1996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR