K08521

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08521

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08521

Determination of introduced cDNA(s)

  • J013152C17 - Rice Full-length cDNAs - Original: J013152C17

    full reading [+] show sequence

    Nucleotide sequence: J013152C17 - full reading 
    GTCCTTCCTC TCCCATGCCG CCGCCTCTTG CCTTGGAAGG GAGGAAAGAA 
    GCGAAGAGAA GAGAGAGCTA GCGGCGGCGG CGGCGGCGGC GGCGAGGCAG 
    CTGGTTGTTT GTTGTTGGTT CCCTCTCCAC GGCGACCTCA TTGCCTCTCC 
    ATCTCTCTCG AGAACCCTCC GCGCGGCGAC CTAGCTCCAC CGTCATCGCA 
    GAGGAGGGGG GATTAGGCTG TAGTAGTGTG AGATGGCTTC GCCGGAGCCG 
    GCCGCGGGGG CGGACGGCGC TTCGGCTAGC CAGACGGCCG TGGTGGAGCC 
    GATCCGGTTG CCGACGCCGG AGGAGATCAA GGGGCAGGAC ATCTGGAACA 
    ACTGCGCCGT CCGCAGCGTC GTCAGTGGAG TCATGGGGGG TGGTTTAGGC 
    GTGCTTATGG GGCTATTCTT TGGAGCTTTG GAAAACCCAA TTACAGCAGA 
    GGAGATGACA GCAAGACAAC AAATAGTATA CCAAGCTAAA CAGATGGGTA 
    GGCGAAGTAT AAGCAATGCC AAAACCTTTG CAGTCATGGG CCTGATTTTC 
    TCTGCCGCTG AATGTGTCAT AGAGAAGGCT CGCGCAAAGC ATGACACTAC 
    CAATTCAGCG GTGGCTGGCT GTGTCACAGG AGGGGCTTTA GCTGCAAAAG 
    GTGGTCCTAA AGCTACATGT GTTGGATGTG TGGGGTTTGC CACCTTCTCG 
    GTAATGATTG AGAAGTTCTT GGATCGTCAT TCTTGAATCA TTGGTGGAAA 
    CATTTTATCG CCTTATTCGC CGTTAATTTC AAGTGAAGCT TTTTGTAGCA 
    GGTTAGCAAC CAAGAGGTGG ATTCAGCATC CAAAACAACC TTTAGTCATT 
    TTAAGACATT CACTCATTGA CATGTCTTCT GAGGTCTTGC AGACCAAGAT 
    TTTGTTATTT TACGAGTGTT ACCCAACATG GTAGGCATAA CTGGAGTAAC 
    TGCGAGGTCT ACAGAAATCG ACCTTTAATA CGAGGCAATG GTTTTGAGTT 
    CTGCAATATG TTGTATCATT CTCACTATAC GGCTGCTATA TTTATCTTCG 
    CAATCCGTAT CCAATTTGCT GTTATCTTGT CTCACGTTAC TCCAATTCTT 
    TATTTCTACT GATCTATTGT CTGACAATCT AGTGGCACGA TATTTGGGAC 
    TGTTCAGAAC ACTGATCAAG TGTTGTACCA TCTTTATATA CTTGAGATAG 
    CACTTGTACT TT

    Gene models with high sequence identity

    1. AT3G10110.1 [+] show detail - Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
      E-value: 9e-46; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mitochondrial inner membrane translocase complex, subunit Tim17/22 7.5e-37
    HMMPanther PTHR14110 2.39999798157241e-34

    See the detailed result >

    AT3G10110.1

    Model type
    Protein coding
    Short Description
    Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
    Computational Description
    maternal effect embryo arrest 67 (MEE67); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrial inner membrane, chloroplast, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT1G18320.1); Has 680 Blast hits to 680 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 229; Plants - 130; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR