K08526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08526

Determination of introduced cDNA(s)

J023107M18 - Rice Full-length cDNAs - Original: J023107M18

full reading [+] show sequence

GGCGCAGACA GTAAGGAACA CAGGCGCCGC GGCCACAACC CACACGCGAA 
CCGGCGAACA CGAGCGAGAG TGCGAGAGCG AGACGCATCC TGCCACCACC 
GGCGACCAAG GCCCGCAGCG AGCCGGTCGC ACGGTGGCAC CTCGCGTCCT 
CGGCCCCTCC TCCTCGCCAT CCGCCCATCC CTCGTCGGTC GCGGCCTCCC 
CGAACGAGCT GGCTCCGAGC CGAGCCAGCT CGGTACACTA ACGAGCTGGA 
GCGAGCCGAG CCGAGCCAAG ATATCCACCC CTAGTGTGGC CACAAACAAC 
AAGAGAGAGC AGACACCACC ACACCATCCA ACCAACCAAA TTCCTCTCTC 
CTCCGCCGCG CCCGCGCCGC AGCAAGCAGG AGGGCCTCCG CCCGTGCGAT 
GCCGGCGGCG GCTAGGCTAC GGGCGGCCCG GTGATGGCGA CCTTCTTCCG 
CAGCGCCAAC CTCGCCTCCA GGGTCTTCGA CCGCCAGTTC CTCTCCCCAC 
GCCCCGGCGC TACTGTTAAC ACTGTTAGAC AGTTCTATGA GAACTTGGTT 
CCGAGTTACA CTATATGTGA CATAGATTGC CCAGATTATT CATTTCGTAA 
ATTCACTGAT GATGGCAACT ATCTTGTGGC TTTTAGCCGG AACCACCAAG 
ATTTAATCGT GTACCGTCCC ATCTGGCCAA CATTTTCATG CAATGAGCCA 
TGCGACTCTC ATGATCTTCC ACCCAAAGCA AAGAAATTCG ACAGCTTCTT 
TAAGCAGCTC TACTCAATTT CACTTGCATC TAGCAATGAA TACATCTGCA 
AGGACTTTTT CCTTTACATG GAGTGCCATC AGTTTGGCTT ATTTGCCACA 
TCAACTGCAC AAAGCAACGA TTCAAGTGCC ACTGAGGGTG CTATTCATGG 
GGTACCATCA ATTGAGAAAA TTACTTTCTA TCTTGTCAGG CTAGACGATG 
GCGCAATACT AGATGAGAAA GCTTTCCGCA ATGATTTTAT CAATCTGGCT 
CATAGTATTG GAGCTTACTT GTATGAGGAC CTGCTATGCA TTGTCTCTCT 
TCGATATCAA ACAATTCATG TCCTACAGAT ACGAGATTCA GGCAACCTTG 
TTGAAGTACG CAAAATTGGT GCATTTTGCC AGGAAGATGA TGAGCTATTT 
CTCCATTCAC ATGGTCAGGC TGCACGAGGT GTTTCTTTTC TTCCTGGCAT 
CAAGCAACGG TTGTTGTCAT TTATTTTTCG CAAGACATGG AATGAGGAAT 
CTGATCAGAC CTTGAGAGTC CAGCATCTGA AGAAGAAGTT CTATTTTCAC 
TTTCAAGACT ATGTTGATCT TATCATATGG AAGGTGCAGT TTTTGGATCG 
TCATCACCTA TTTATCAAGT TTGGTAGTGT GGATGGAGGG GTTTCTCGCA 
GCACTGAACA GAATTCAGCA TTCTTTGCTG TGTACAACAT GGAGACGACA 
GATATTGTTT CACTCTATCA GAATTCTTCG GAGGAGCTCT ATTCATTGTT 
TGAATATTTT TATGACCATT TTCACACAAA TCCACAAAAT TCATCGCATG 
GAAATTTTAT CTCGTCACAT TCCAATAATG TTCATGCTCT CGATCAACTT 
CGGACAATTA AAAATAAAGC AAACAGCACC TCACAGTTTG TGAAAAAGAT 
GATGGCGTCA CTACCTTACA CTTGTCAATC ACAAAGTCCT TCGCCATACT 
TTGACCTATC ATTGTTTCGG TATGATGAGA AGCTGATTTC AGCGATTGAT 
CGGCACAGAC ACTGTACAGA GCATCCAATA AAATTTATAT CAGTGAAACA 
GCCAAATGTT GTCAAATTCA AGATAAAACC AGGTTCAGAT TCTGGTGCTT 
CTGACAGCAG GGCAAAAAGA ATATCTTCCT TCTTGTTTCA CCCATTTTTC 
CCTCTCGCAC TTTCTATTCA GCAGACATAT ATGCAGCCAA CTGTTGTCAA 
TTTACATTTC AGGAGATAGA ACGATATTGC CGTTCCCTCA ATTGTATTTG 
TAACAGTTGT GAGCGGTGCA CAGCTCAGTA AAAATTTTGG CCGCTTGTAG 
TAGGATGTTT TATCGGCAAA GATCTTATTA TAGGCAAAGG AAAAATGTGG 
GTTTAGGTTC TC

Gene models with high sequence identity

AT4G10180.1 [+] show detail - light-mediated development protein 1 / deetiolated1 (DET1)
E-value: 0; Score: 681.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	De-etiolated protein 1, Det1	8.3e-138
HMMPanther	DET1 HOMOLOG (DE-ETIOLATED-1 HOMOLOG)	2.1e-119

See the detailed result >

AT4G10180.1

Model type: Protein coding
Short Description: light-mediated development protein 1 / deetiolated1 (DET1)
Curator Summary: Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.
Computational Description: DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1 (InterPro:IPR019138), Six-hairpin glycosidase-like (InterPro:IPR008928); Has 248 Blast hits to 240 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link: InterPro Scan - TAIR