K08536

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08536

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08536

Determination of introduced cDNA(s)

  • J013097A17 - Rice Full-length cDNAs - Original: J013097A17

    full reading [+] show sequence

    Nucleotide sequence: J013097A17 - full reading
    GATTGCTGCT ACTCTCTCTC CCCTTCTCTT CTCCGGTTCT CCCTCTCCTC 
    CTCCCACCTC AGCCGCCGCT TACCGGCGGC GCCGCCTGCT AATCTGCCGG
    CGTGAGCACC GGCGGAGATG TGTTACTGCT ACCCAACCTA TAACGCAGCT
    CTCCCGCGCA GTGCCTCTGT CTCTAGCTAG GGTTTTCCTC TTGGGGGAGA
    CGACCTACTA TGGTAAGGTG GGGAGCTGAA GCCGGCGACC TGGTGCTGTC
    CGGAGGAAGC TGGAGCTCGT CGCCGTCGGA TGGACGCCGA TGAGGCCGCG
    GGGAGTAGCA GGAGGATGGA TCTGAACCTC TACCTTGGCC TCCCACGCGC
    CCCGCGCCCG CGCCGCTCCG ACCTCGGCTC CGACCTCGCC CTCAGCACCC
    CGATGCCCTC CTCCCCGTCC TCCTCCGCAG CCTCCGTCGA CGCGCCGCCG
    CCACCGCCCG AGCTGTCGCA TCCCCCGTAC TCCCCCTCTC ACGCCGACCT
    TTCCCCTCCG CTGCAGGAGG TCTACTCCCT GTACAACCCC GACGACCCGC
    CTGCTTCCGA GACGCACCTG CCGCCGTATG CGCCGCCTCC GGCTCCGGTG
    GTCTCGGAGC TCCCTGACGA CCTCGAGTTT GGCCTCCACC CCCCGCCGCC
    GCTGGTGCGT GCCAGCGAAC TGCTAGGTTG GGAGGACCGG CCGTCTTCGT
    CGACGGCATC GTCCTCTTTC CTCCCTGACA CCGCAGCCCG TTACTGGCGG
    CTTCTCGAGC AGACTGGAAG CAGATGGCTC CGTGCGAGGC GGTTTAGGTC
    GGACCTTCCG CCACTCAGTT CTGAAGCTTA CCCAGCTGGG CGTGATGCTG
    CCGCAGTCCC AGTGCTGCAG CATGAACCGA TGAATGATAC TGTTGAACAT
    AATAAGGTAG CTGCCGATGG CGCGGAAGTA GGCGCCTCCG AGGAATCGGA
    GGAGCAGGGC AGGAGCGCTG CCACATTTGA GTGTAATATA TGCTTCGATA
    TGGCCAGCGA GCCGGTGGTC ACCTCTTGTG GCCATCTCTT CTGCTGGCCT
    TGCTTGTACC AATGGCTCAA TGTTTATTCC AATCACAAGG AATGCCCAGT
    CTGCAAAGGC GAGGTGACTG AGGCGAATAT TACTCCGATC TATGGGAGAG
    GGAATTCATG TTTGGATGCC GAGAAGGCTG TGGAAGGTGG GAAACAAACA
    GGTCCTACTA TCCCACCAAG ACCACATGGA AATCGGCTCG AAAGCTTCAG
    GCAGCAGTTT CACCATTTGC GACCGATCTC AAGAAGGCTT GGTGAGGCTC
    ATGGGTTATT GTCATCATGG AGGCGCCTTC TGGACCAACA GATTATGAAT
    ACTGCGAGTA GGTTTGAAGG TCCGCCTGAA TCAGCTGTGC AGGAAATGGT
    TGACACTGCT CACGCTCAGC ACACCAGTCG CCTAAGTAGA TTGGCGTCAA
    GGATGAGAGC AAGACGGTTG CTGAGAGAAG CAGACAACCC TAACCCTCCC
    GATGGCGGAT CCACTTCCCC TGACAGTGGT TTGATCAGAA ACAATGCATC
    GGATCCATCC AGAAATGGTC CGAGCTCATT ATTACCAGAT GGAATTGACT
    GGTTGCGTGG ACTTACCCTT CTTGGGTATG AAGACACGGA AAGATTTGCA
    TCTGCCATGA GTGATTTTAG AAGGATAACT GGACCAAGCC AATATGGTGC
    ATCGGCTTCA TCATCGAATC CTCCAAATCT CGAGTCAACA TTTGACAGAA
    CTCATGTTGT TGCAGCACCT TCTGCAGACC AAGCATCTAA CTCAAGCACT
    GCTGCAGTGA TACAGGGGGA TGCTGGTATC TCTGAGAGTG CAGGAGAACC
    AAGTAACGCG GGGTCATCAA GATCCCTGAG GAGGAGAGGG AGGAGCAGTG
    CCCTGGGTTC TTTGGATGCT GATGGCGGGG GCCTCCAACG GAACAAGAGG
    CGAAGGATAA ACTGAACATT CTGTGTTGTG GTGTTGATCT AAACTCTGCA
    TGCCATGCTC GCTGATTTTC AACTATTGCA TTTCATTTCT TCGGGTGATG
    TCTCCTGTGT TGTAGTGTAA CATTTTTTCT TCTCTTTTCA TTTTCCCCCG
    TAGGTTGCAC TGAAATGTTT ATCTGTTTAG TTCTCATGTA GCCTGTACCT
    GTTTAATTTA TGGAAAGTTA TTGATCAAGA CATTTTTGCA TTCGAAAGGT
    AATGAATGGT TCAACTGCAT TTCCATGACA ATAAATTGGA TGCTGAAATG
    TGCATCCAAC ACAATGGTAT TCTTGTGCAT CAAATAATAG GCATAAACAT
    TGTGTTTTTA TTTGTGTCAA TAAGCTCCTT CAGACATATA GAAAACTAAC
    AGGTCAATAA TGTAGTATAT TGAAGTTGGA AGGAATACCC AGAGAATGGA
    TCCATGGACA CAATTGTCTT TTGTTGCTTG GGAGAAGGTA CATAGCCTGA
    TCTTTAGTCC TTGTTTATCC TCCAATGAAA ATACTCACGC ATTGATTGTT
    TCAATAGACA AGGTAAACTT TGCCATCGCC GTGAATTTTA TGATCCATGG
    AAGCTGTTTC ATTGAGCAGT GGTGGGTGTA ACTGTGATAA CCTTTATATT
    ACTTGCTTGC TTTTAAGGAA TAGCACACTT TTTGTGGGGA TGGGATTACT
    CCCCTTTTTG GAACTACATA TTGAGGAACG GATTTAACAT AGAAAGAGCT
    TAATACATTT AAGTACTGAT TGTGTGCATA GAAAGGGGTT TATTATTTGG
    AACAAAATTG CTTAGCTCGT AGTAATAAGG AAGTTCATAG TATTGAACTT
    TATATGACAT GTGAGTTATA TATATCATGT TTGTCTTTGG TCACTTCTAT
    TTTATGACCA TGTAACATTT ATTTCATGTG GAACTTGGCA GAAGAGAATT
    TGAAGAGATT TCTTCTGATT GATTTCCATT TCGGACAAAA TACAAAGCTC
    CCAGACCAGC TGTCACAAAG AGGTCTGGTT GATTTTCCAG ATTTGTATGC
    CTGTCTCTAG CCGAGAGTAA CAGGTATTTT TCTGCATCTA TGACTGGCAT
    GGATAGTAGA TTGGCATATG GAAACAAACT CGGAAGGGTT TGGGTGGTGC
    TTAGGTGCTC TTGGCAGGGA AGGGAGACAA CTCTGTGTTT TTGGGTTTTC
    AGTACATCTA TCCTACATAT CTTCCAAAAG CTCACACATA AGCCAGTTAA
    TTGTTTTTTT TTTTGGCTTG CAGAATTACC TCAATAACTT CCATGTAAAT
    ATTTTACTCT TTTGCAGTAT TACATGAACA GATTCAATGC TATTTTTCTG
    CAGAACTGCC CCAAGATGTA AAATGAAAAT GCATTGAGTC TGTTCAATTA
    GAAAACACAA GATCACTGTG TATACTGTTC AAAGAATGTG CTAAACATAT
    TATAGAACC

    Gene models with high sequence identity

    1. AT3G58030.4 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-27; Score: 122.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 1.3e-19
    Gene3D no description 4.4e-18
    ProfileScan Zinc finger, RING-type 13.788
    HMMPfam Zinc finger, C3HC4 RING-type 0.000000058
    HMMPanther RNF5 1.2e-42
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMSmart Zinc finger, RING-type 0.0000000043

    See the detailed result >

    AT3G58030.4

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1).
    Link
    InterPro Scan - TAIR