K08536

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08536

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08536

Determination of introduced cDNA(s)

  • J013097A17 - Rice Full-length cDNAs - Original: J013097A17

    full reading [+] show sequence

    Nucleotide sequence: J013097A17 - full reading 
    GATTGCTGCT ACTCTCTCTC CCCTTCTCTT CTCCGGTTCT CCCTCTCCTC 
    CTCCCACCTC AGCCGCCGCT TACCGGCGGC GCCGCCTGCT AATCTGCCGG 
    CGTGAGCACC GGCGGAGATG TGTTACTGCT ACCCAACCTA TAACGCAGCT 
    CTCCCGCGCA GTGCCTCTGT CTCTAGCTAG GGTTTTCCTC TTGGGGGAGA 
    CGACCTACTA TGGTAAGGTG GGGAGCTGAA GCCGGCGACC TGGTGCTGTC 
    CGGAGGAAGC TGGAGCTCGT CGCCGTCGGA TGGACGCCGA TGAGGCCGCG 
    GGGAGTAGCA GGAGGATGGA TCTGAACCTC TACCTTGGCC TCCCACGCGC 
    CCCGCGCCCG CGCCGCTCCG ACCTCGGCTC CGACCTCGCC CTCAGCACCC 
    CGATGCCCTC CTCCCCGTCC TCCTCCGCAG CCTCCGTCGA CGCGCCGCCG 
    CCACCGCCCG AGCTGTCGCA TCCCCCGTAC TCCCCCTCTC ACGCCGACCT 
    TTCCCCTCCG CTGCAGGAGG TCTACTCCCT GTACAACCCC GACGACCCGC 
    CTGCTTCCGA GACGCACCTG CCGCCGTATG CGCCGCCTCC GGCTCCGGTG 
    GTCTCGGAGC TCCCTGACGA CCTCGAGTTT GGCCTCCACC CCCCGCCGCC 
    GCTGGTGCGT GCCAGCGAAC TGCTAGGTTG GGAGGACCGG CCGTCTTCGT 
    CGACGGCATC GTCCTCTTTC CTCCCTGACA CCGCAGCCCG TTACTGGCGG 
    CTTCTCGAGC AGACTGGAAG CAGATGGCTC CGTGCGAGGC GGTTTAGGTC 
    GGACCTTCCG CCACTCAGTT CTGAAGCTTA CCCAGCTGGG CGTGATGCTG 
    CCGCAGTCCC AGTGCTGCAG CATGAACCGA TGAATGATAC TGTTGAACAT 
    AATAAGGTAG CTGCCGATGG CGCGGAAGTA GGCGCCTCCG AGGAATCGGA 
    GGAGCAGGGC AGGAGCGCTG CCACATTTGA GTGTAATATA TGCTTCGATA 
    TGGCCAGCGA GCCGGTGGTC ACCTCTTGTG GCCATCTCTT CTGCTGGCCT 
    TGCTTGTACC AATGGCTCAA TGTTTATTCC AATCACAAGG AATGCCCAGT 
    CTGCAAAGGC GAGGTGACTG AGGCGAATAT TACTCCGATC TATGGGAGAG 
    GGAATTCATG TTTGGATGCC GAGAAGGCTG TGGAAGGTGG GAAACAAACA 
    GGTCCTACTA TCCCACCAAG ACCACATGGA AATCGGCTCG AAAGCTTCAG 
    GCAGCAGTTT CACCATTTGC GACCGATCTC AAGAAGGCTT GGTGAGGCTC 
    ATGGGTTATT GTCATCATGG AGGCGCCTTC TGGACCAACA GATTATGAAT 
    ACTGCGAGTA GGTTTGAAGG TCCGCCTGAA TCAGCTGTGC AGGAAATGGT 
    TGACACTGCT CACGCTCAGC ACACCAGTCG CCTAAGTAGA TTGGCGTCAA 
    GGATGAGAGC AAGACGGTTG CTGAGAGAAG CAGACAACCC TAACCCTCCC 
    GATGGCGGAT CCACTTCCCC TGACAGTGGT TTGATCAGAA ACAATGCATC 
    GGATCCATCC AGAAATGGTC CGAGCTCATT ATTACCAGAT GGAATTGACT 
    GGTTGCGTGG ACTTACCCTT CTTGGGTATG AAGACACGGA AAGATTTGCA 
    TCTGCCATGA GTGATTTTAG AAGGATAACT GGACCAAGCC AATATGGTGC 
    ATCGGCTTCA TCATCGAATC CTCCAAATCT CGAGTCAACA TTTGACAGAA 
    CTCATGTTGT TGCAGCACCT TCTGCAGACC AAGCATCTAA CTCAAGCACT 
    GCTGCAGTGA TACAGGGGGA TGCTGGTATC TCTGAGAGTG CAGGAGAACC 
    AAGTAACGCG GGGTCATCAA GATCCCTGAG GAGGAGAGGG AGGAGCAGTG 
    CCCTGGGTTC TTTGGATGCT GATGGCGGGG GCCTCCAACG GAACAAGAGG 
    CGAAGGATAA ACTGAACATT CTGTGTTGTG GTGTTGATCT AAACTCTGCA 
    TGCCATGCTC GCTGATTTTC AACTATTGCA TTTCATTTCT TCGGGTGATG 
    TCTCCTGTGT TGTAGTGTAA CATTTTTTCT TCTCTTTTCA TTTTCCCCCG 
    TAGGTTGCAC TGAAATGTTT ATCTGTTTAG TTCTCATGTA GCCTGTACCT 
    GTTTAATTTA TGGAAAGTTA TTGATCAAGA CATTTTTGCA TTCGAAAGGT 
    AATGAATGGT TCAACTGCAT TTCCATGACA ATAAATTGGA TGCTGAAATG 
    TGCATCCAAC ACAATGGTAT TCTTGTGCAT CAAATAATAG GCATAAACAT 
    TGTGTTTTTA TTTGTGTCAA TAAGCTCCTT CAGACATATA GAAAACTAAC 
    AGGTCAATAA TGTAGTATAT TGAAGTTGGA AGGAATACCC AGAGAATGGA 
    TCCATGGACA CAATTGTCTT TTGTTGCTTG GGAGAAGGTA CATAGCCTGA 
    TCTTTAGTCC TTGTTTATCC TCCAATGAAA ATACTCACGC ATTGATTGTT 
    TCAATAGACA AGGTAAACTT TGCCATCGCC GTGAATTTTA TGATCCATGG 
    AAGCTGTTTC ATTGAGCAGT GGTGGGTGTA ACTGTGATAA CCTTTATATT 
    ACTTGCTTGC TTTTAAGGAA TAGCACACTT TTTGTGGGGA TGGGATTACT 
    CCCCTTTTTG GAACTACATA TTGAGGAACG GATTTAACAT AGAAAGAGCT 
    TAATACATTT AAGTACTGAT TGTGTGCATA GAAAGGGGTT TATTATTTGG 
    AACAAAATTG CTTAGCTCGT AGTAATAAGG AAGTTCATAG TATTGAACTT 
    TATATGACAT GTGAGTTATA TATATCATGT TTGTCTTTGG TCACTTCTAT 
    TTTATGACCA TGTAACATTT ATTTCATGTG GAACTTGGCA GAAGAGAATT 
    TGAAGAGATT TCTTCTGATT GATTTCCATT TCGGACAAAA TACAAAGCTC 
    CCAGACCAGC TGTCACAAAG AGGTCTGGTT GATTTTCCAG ATTTGTATGC 
    CTGTCTCTAG CCGAGAGTAA CAGGTATTTT TCTGCATCTA TGACTGGCAT 
    GGATAGTAGA TTGGCATATG GAAACAAACT CGGAAGGGTT TGGGTGGTGC 
    TTAGGTGCTC TTGGCAGGGA AGGGAGACAA CTCTGTGTTT TTGGGTTTTC 
    AGTACATCTA TCCTACATAT CTTCCAAAAG CTCACACATA AGCCAGTTAA 
    TTGTTTTTTT TTTTGGCTTG CAGAATTACC TCAATAACTT CCATGTAAAT 
    ATTTTACTCT TTTGCAGTAT TACATGAACA GATTCAATGC TATTTTTCTG 
    CAGAACTGCC CCAAGATGTA AAATGAAAAT GCATTGAGTC TGTTCAATTA 
    GAAAACACAA GATCACTGTG TATACTGTTC AAAGAATGTG CTAAACATAT 
    TATAGAACC

    Gene models with high sequence identity

    1. AT3G58030.4 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-27; Score: 122.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 1.3e-19
    Gene3D no description 4.4e-18
    ProfileScan Zinc finger, RING-type 13.788
    HMMPfam Zinc finger, C3HC4 RING-type 5.8e-08
    HMMPanther RNF5 1.2e-42
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMSmart Zinc finger, RING-type 4.3e-09

    See the detailed result >

    AT3G58030.4

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1).
    Link
    InterPro Scan - TAIR