K08538

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08538

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08538

Determination of introduced cDNA(s)

  • J033052L15 - Rice Full-length cDNAs - Original: J033052L15

    full reading [+] show sequence

    Nucleotide sequence: J033052L15 - full reading 
    GGGCGGCATA GTTGAGCACT TGAGTGGTAA AATTGAGCTA GCTCTTTCTC 
    CTCCTCCTCC TCTTCCTCTT CTTATTCTTG TTTTCTGATG TTCTTTTCAT 
    TTCCTGATTA TTACCTTCTC GAGTTCCCAC CAGATCGGAC GGAGTGGCGG 
    CGTTGTACCT GTCGTAGAGA AGAAGCGAAC GGTGGGCGGC CGCAGGATGT 
    CGGAGCTGGA GGTGTATAGC TTGCTGCAGA AGATGGCGGC GATGAGGGAC 
    GGCGGCGACT GGCCGGCCGG TGCGGAGTTG GAGTTGCAGG AGTTGTACAC 
    CGTCCTCGAG AAGGTGCAGC GCAAGATGGC TCACGCGGAG CCGCTGGTCG 
    TCGTCGACAG CGGCAACTCC GCCCGCGCCG CCTACTCCCT CTTCCTCGCA 
    GACCTTCGCC GCGTCACGTT CACCGTCGAC CAAGCCCTCG ATAGCTACTC 
    CGCCAGCGCC CGCCGCTCCC CGTTCATGCA CCGCGTGCGT TCGGTGGCTC 
    TGATGGGGAT GGCGGCATAT GGTGTTTTCG CGTTTCTCTC GGCCCGTTCG 
    TCTTCCCTGC TGCAGGAAAA GCTTTTGCCG CAGCCGCTAG AGCTGCGCCC 
    CAAGATCGCC AGAAAGTTGG AAGAGGCCGT GAAGGACGTG AGGATGCTTC 
    TCCGCCTCTT CAGTACCTAC GTCGCCGATC TCCTGCCGCC GCCGGAGCAC 
    CAGCAGCCAG AGCCTGGTCT CGGCGCTGAC CCCGACGATA CGTGGTCTCT 
    TGCCGATCAA AAAGAAGCCA ACCTCCTTGT CAAAGGAAGA GAACAGGACA 
    GATGTAAGGT ACGGCAGATC CTCGAACATC CTGGAACGAA AGTGGTCGTA 
    ATTGTAGGAA TGGCCGGGGC CGGGAAGACG AAGCTCACCA GGCATCTGCT 
    GTGCGAAATG TGTAGTGCTA CTACGCATGG CTTCAACTAC TCTCTTTGGG 
    TTACAGTGTC CCAAGATTTC AATCCAGAAT GGATTTATCG GCAGGTGATG 
    TCTAAGCTGA GCGATCAATT GAAGGCAGGC GAAGATGCTG AAAGCTTCTG 
    GTGGTCTCTA AATTCAGATC TAAATGAAGG CTTGATCAAT AAGAAGCATT 
    TGCTTGTGCT CGATGGCGTC TGGAACGAAG ACCCTCGTAA GTGGAAGGAA 
    CTGATGGATC TCCTCTACGG CAATTGCACG CAAAAGACCA AAATCATCGT 
    CACTACCAGG ATTCCTGCGG CGGCTGCTGC TATAAGCTCT GCAGTAATCT 
    ACCACCTGCA CCCGTTCTCG GTGGAGCATA CCTTGGAGAT GCTCCAAACG 
    ATCAATGGGG AGCTGCCTGA GAAGTTGCTC GGCGGTGGCA GTAGCAACGC 
    TACCGTGTCT ACTGCTGCGG CTAAAGAATT GAGTAAGAGG AAGGTCGCAG 
    AGAAATGCAG CGGTTTGCCC ACCATCATAA AGTTCTTGAG CTCTTCTCTT 
    GAATCTATCT GTGCAAACGA GGTTGCTGAT CCACTAAAAC AGTTTGATAT 
    GATGTGTGCT GGCAACCAAG GACTGCTGCA CATCGCTGAG GCCAGCTATA 
    ACCATCTTCC ACCACATCTG AAGCGGTGCT TCCTCTACTG CTCCTTGTTC 
    CCATATCATC ACATCTTTGA TACTGACGAG ATGATTAGCC TGATGGTTGC 
    TGAAGGTTTA ACACAGACTA CAAGCAGGGA AGCCCAAGTG GATGGTGATA 
    TCAGCAGGCT TCAGAGTGAA TGCTTTGATC TTGTCAATAA TCCTGGGTCT 
    AATGGGGGAA TCAGAAGAGG ATGCATGATG CATCGAGTAT TGCACATCCT 
    TGCACGGCAC AAAGGGCAAG AACTATATAA AGCTATTGTG GGTGATCATT 
    CTGCTGCTTT GAAAGAACAT TCCAATATCA GATATATGTC TCTCACAGTT 
    GATCATACAA CTACGGAGCT CCCAGGGTCG CTGACTGCGC ACACAGATTT 
    GAGGACGCTG ATCCTACTCA GAACGCAGAA GATGGTCTTG TCTGGTCAGA 
    AGTCTGAAAT CAAAGAGATC CCTTCTGATT ACTGCCGCTA TCTCACATAC 
    TTGCGTGTAT TGGACCTGCA GGCAACCAAG ATCAATAAGT TGCCTGAGAA 
    AGTCGAAATG CTCTCAAATC TGAGGTATCT GAACCTTTCC CAAACCGATA 
    TTGACAAACT GCCTGAATCA ATTGGCAGAC TTCAGTACCT GGTATCCCTC 
    AACATTTCTC AAACATGCAT TGCGACAGTT CCAGATTATA TTGGCAAAAT 
    TCACTCTTTG AGGTACCTCA ATCTTTCTCA AACTGATATT GGAAAACTGC 
    CTGATTCAAT TTGTTCGCTC CGACTGTTGC AAACCTTGCA GCTATCACGC 
    TGTGAAAAGC TTACCAAACT ACCACAAAAT ATAGGATCCG TGACAAGTTT 
    ACAAAGGTTA GACCTAGAAG GTTGCTACTA TCTATCCGAG ATGCCTCAGG 
    ATATAAGCAA CTTGAAAAAT GTGAAGGAGC TAAATGTACT GGAATGTCCC 
    TCACTGGATA AAATGCCTTG TGGGCTGAGT GCACTAACCA AGATTGAAGC 
    ATTGCCAAGG TACATTGCAA CCAGTGGTGA CAACAATCCC ATATTGGAGC 
    TGCGGGATTT GGTAAAATTG AAAAGACTGG GTTTGGAAAA CATTGCAAAT 
    ATTTCCAATG AGGATGCCGA GAAAATACAA CTGCAAAAGA AACATGAGCT 
    CGAGCATTTG ACACTTAATT GCAATATGGA TGCTGAAAAC AGAAAATCAA 
    GTTCTGAAGT GAAGGAGCTA CTGGACTGTC TAGAGCCCAA CCCAGGGTTG 
    AAAATACTGG AGATCATTTC TTATGCAGGG GAAACGTTCC CGTGCTGGAT 
    GGCCAACACA AATCCACAAC TTAAGAAGCT CACTCAGATC AGAATCATCA 
    GATTGATTAA TCTGAAGTGC AGCAGTCTCC CGCCGCTTGG GCAGCTACAT 
    CAACTTGAGA CTCTAGAGAT CAGTGGAATG AATGCCATAA AAAATGTCAG 
    CAGTGAGCTA CACGGTGAAC TGAATGCTGA TACATTCCGT TCTCTAAAGA 
    AGATCGTCTT TTCTCATATG GTTAACCTAC AATGTTGGCC GGTGGAAAAT 
    GGTGCTATAT GTGAACATCT TAAAGAGTTG TCAATTATCC AATGCCCAAA 
    ATTTC

    Gene models with high sequence identity

    1. AT3G14470.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 2e-44; Score: 178.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NB-ARC 1.7e-38
    HMMPfam Leucine-rich repeat 0.87
    HMMPfam Leucine-rich repeat 0.43
    Gene3D no description 1.3e-25
    FPrintScan Disease resistance protein 8.4e-13
    FPrintScan Disease resistance protein 8.4e-13
    FPrintScan Disease resistance protein 8.4e-13
    FPrintScan Disease resistance protein 8.4e-13
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2.2e-28
    superfamily L domain-like 1.2e-36
    superfamily P-loop containing nucleoside triphosphate hyd 2.8e-13

    See the detailed result >

    AT3G14470.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Computational Description
    NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: protein binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT3G14460.1); Has 25652 Blast hits to 19792 proteins in 681 species: Archae - 38; Bacteria - 1467; Metazoa - 4997; Fungi - 304; Plants - 18213; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR