K08538

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08538

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08538

Determination of introduced cDNA(s)

  • J033052L15 - Rice Full-length cDNAs - Original: J033052L15

    full reading [+] show sequence

    Nucleotide sequence: J033052L15 - full reading
    GGGCGGCATA GTTGAGCACT TGAGTGGTAA AATTGAGCTA GCTCTTTCTC 
    CTCCTCCTCC TCTTCCTCTT CTTATTCTTG TTTTCTGATG TTCTTTTCAT
    TTCCTGATTA TTACCTTCTC GAGTTCCCAC CAGATCGGAC GGAGTGGCGG
    CGTTGTACCT GTCGTAGAGA AGAAGCGAAC GGTGGGCGGC CGCAGGATGT
    CGGAGCTGGA GGTGTATAGC TTGCTGCAGA AGATGGCGGC GATGAGGGAC
    GGCGGCGACT GGCCGGCCGG TGCGGAGTTG GAGTTGCAGG AGTTGTACAC
    CGTCCTCGAG AAGGTGCAGC GCAAGATGGC TCACGCGGAG CCGCTGGTCG
    TCGTCGACAG CGGCAACTCC GCCCGCGCCG CCTACTCCCT CTTCCTCGCA
    GACCTTCGCC GCGTCACGTT CACCGTCGAC CAAGCCCTCG ATAGCTACTC
    CGCCAGCGCC CGCCGCTCCC CGTTCATGCA CCGCGTGCGT TCGGTGGCTC
    TGATGGGGAT GGCGGCATAT GGTGTTTTCG CGTTTCTCTC GGCCCGTTCG
    TCTTCCCTGC TGCAGGAAAA GCTTTTGCCG CAGCCGCTAG AGCTGCGCCC
    CAAGATCGCC AGAAAGTTGG AAGAGGCCGT GAAGGACGTG AGGATGCTTC
    TCCGCCTCTT CAGTACCTAC GTCGCCGATC TCCTGCCGCC GCCGGAGCAC
    CAGCAGCCAG AGCCTGGTCT CGGCGCTGAC CCCGACGATA CGTGGTCTCT
    TGCCGATCAA AAAGAAGCCA ACCTCCTTGT CAAAGGAAGA GAACAGGACA
    GATGTAAGGT ACGGCAGATC CTCGAACATC CTGGAACGAA AGTGGTCGTA
    ATTGTAGGAA TGGCCGGGGC CGGGAAGACG AAGCTCACCA GGCATCTGCT
    GTGCGAAATG TGTAGTGCTA CTACGCATGG CTTCAACTAC TCTCTTTGGG
    TTACAGTGTC CCAAGATTTC AATCCAGAAT GGATTTATCG GCAGGTGATG
    TCTAAGCTGA GCGATCAATT GAAGGCAGGC GAAGATGCTG AAAGCTTCTG
    GTGGTCTCTA AATTCAGATC TAAATGAAGG CTTGATCAAT AAGAAGCATT
    TGCTTGTGCT CGATGGCGTC TGGAACGAAG ACCCTCGTAA GTGGAAGGAA
    CTGATGGATC TCCTCTACGG CAATTGCACG CAAAAGACCA AAATCATCGT
    CACTACCAGG ATTCCTGCGG CGGCTGCTGC TATAAGCTCT GCAGTAATCT
    ACCACCTGCA CCCGTTCTCG GTGGAGCATA CCTTGGAGAT GCTCCAAACG
    ATCAATGGGG AGCTGCCTGA GAAGTTGCTC GGCGGTGGCA GTAGCAACGC
    TACCGTGTCT ACTGCTGCGG CTAAAGAATT GAGTAAGAGG AAGGTCGCAG
    AGAAATGCAG CGGTTTGCCC ACCATCATAA AGTTCTTGAG CTCTTCTCTT
    GAATCTATCT GTGCAAACGA GGTTGCTGAT CCACTAAAAC AGTTTGATAT
    GATGTGTGCT GGCAACCAAG GACTGCTGCA CATCGCTGAG GCCAGCTATA
    ACCATCTTCC ACCACATCTG AAGCGGTGCT TCCTCTACTG CTCCTTGTTC
    CCATATCATC ACATCTTTGA TACTGACGAG ATGATTAGCC TGATGGTTGC
    TGAAGGTTTA ACACAGACTA CAAGCAGGGA AGCCCAAGTG GATGGTGATA
    TCAGCAGGCT TCAGAGTGAA TGCTTTGATC TTGTCAATAA TCCTGGGTCT
    AATGGGGGAA TCAGAAGAGG ATGCATGATG CATCGAGTAT TGCACATCCT
    TGCACGGCAC AAAGGGCAAG AACTATATAA AGCTATTGTG GGTGATCATT
    CTGCTGCTTT GAAAGAACAT TCCAATATCA GATATATGTC TCTCACAGTT
    GATCATACAA CTACGGAGCT CCCAGGGTCG CTGACTGCGC ACACAGATTT
    GAGGACGCTG ATCCTACTCA GAACGCAGAA GATGGTCTTG TCTGGTCAGA
    AGTCTGAAAT CAAAGAGATC CCTTCTGATT ACTGCCGCTA TCTCACATAC
    TTGCGTGTAT TGGACCTGCA GGCAACCAAG ATCAATAAGT TGCCTGAGAA
    AGTCGAAATG CTCTCAAATC TGAGGTATCT GAACCTTTCC CAAACCGATA
    TTGACAAACT GCCTGAATCA ATTGGCAGAC TTCAGTACCT GGTATCCCTC
    AACATTTCTC AAACATGCAT TGCGACAGTT CCAGATTATA TTGGCAAAAT
    TCACTCTTTG AGGTACCTCA ATCTTTCTCA AACTGATATT GGAAAACTGC
    CTGATTCAAT TTGTTCGCTC CGACTGTTGC AAACCTTGCA GCTATCACGC
    TGTGAAAAGC TTACCAAACT ACCACAAAAT ATAGGATCCG TGACAAGTTT
    ACAAAGGTTA GACCTAGAAG GTTGCTACTA TCTATCCGAG ATGCCTCAGG
    ATATAAGCAA CTTGAAAAAT GTGAAGGAGC TAAATGTACT GGAATGTCCC
    TCACTGGATA AAATGCCTTG TGGGCTGAGT GCACTAACCA AGATTGAAGC
    ATTGCCAAGG TACATTGCAA CCAGTGGTGA CAACAATCCC ATATTGGAGC
    TGCGGGATTT GGTAAAATTG AAAAGACTGG GTTTGGAAAA CATTGCAAAT
    ATTTCCAATG AGGATGCCGA GAAAATACAA CTGCAAAAGA AACATGAGCT
    CGAGCATTTG ACACTTAATT GCAATATGGA TGCTGAAAAC AGAAAATCAA
    GTTCTGAAGT GAAGGAGCTA CTGGACTGTC TAGAGCCCAA CCCAGGGTTG
    AAAATACTGG AGATCATTTC TTATGCAGGG GAAACGTTCC CGTGCTGGAT
    GGCCAACACA AATCCACAAC TTAAGAAGCT CACTCAGATC AGAATCATCA
    GATTGATTAA TCTGAAGTGC AGCAGTCTCC CGCCGCTTGG GCAGCTACAT
    CAACTTGAGA CTCTAGAGAT CAGTGGAATG AATGCCATAA AAAATGTCAG
    CAGTGAGCTA CACGGTGAAC TGAATGCTGA TACATTCCGT TCTCTAAAGA
    AGATCGTCTT TTCTCATATG GTTAACCTAC AATGTTGGCC GGTGGAAAAT
    GGTGCTATAT GTGAACATCT TAAAGAGTTG TCAATTATCC AATGCCCAAA
    ATTTC

    Gene models with high sequence identity

    1. AT3G14470.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 2e-44; Score: 178.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NB-ARC 1.7e-38
    HMMPfam Leucine-rich repeat 0.87
    HMMPfam Leucine-rich repeat 0.43
    Gene3D no description 1.3e-25
    FPrintScan Disease resistance protein 0.00000000000084
    FPrintScan Disease resistance protein 0.00000000000084
    FPrintScan Disease resistance protein 0.00000000000084
    FPrintScan Disease resistance protein 0.00000000000084
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2.2e-28
    superfamily L domain-like 1.2e-36
    superfamily P-loop containing nucleoside triphosphate hyd 0.00000000000028

    See the detailed result >

    AT3G14470.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Computational Description
    NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: protein binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT3G14460.1); Has 25652 Blast hits to 19792 proteins in 681 species: Archae - 38; Bacteria - 1467; Metazoa - 4997; Fungi - 304; Plants - 18213; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR