K08550

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08550

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08550

Determination of introduced cDNA(s)

  • J033133B01 - Rice Full-length cDNAs - Original: J033133B01

    full reading [+] show sequence

    Nucleotide sequence: J033133B01 - full reading 
    GAGTTTGCTT TTGCTCCACC CACCACCACC GCTGCTTCCA AGTTCCAACC 
    GCTCCCTCTC TCGTCGCTGA GCTCTCCTCC GGTGGGCGGC GCGGCGATGG 
    CGGGGGACCC GGCGGCGGCG GCAGCGGCGG TTGGGGCGAT GAGGCCGTGG 
    AACTACGTGG TGACGGCGCA CAAGCTGACG GTCGTCGCCC GCTCCTGCGT 
    CGGCAACTTC ACCGCGCCCG ATCACCTCGA CCTCTCGAAA TTTACCCGTA 
    TTGAGATTGG AGTATCTGCT TACTCATCAG GGTCTTCAGG TCAGACAGAT 
    TTGCCTCGAC CAGAATATGT TCCTTCTGTT TGAACCTATC TATTATTATG 
    GACAGCAAAT AACTGTGCCT TGTTGTTAGC ATCAATTGTT GAAAAGGTGT 
    TTTTTAAGGT TATTCATAAT GGCTACTGTT GTTCAGATAA ATGCTGATAT 
    ACTTTTAGTT GACAAGTTAG AATTTGTCCT GGCAGATCAA CTGGTTACAT 
    GATATTCTTA CAACTATAAC TCTGTAAGAC CTTTTCTTTC CTTACCAGCC 
    TATGCTTGAT GCACCTGTGT ATGGTAGAAT TGCAACAATT GAGCTCTTCC 
    GTCCATGTGT AAGTTTGTAC TCTGTTTCTA CAGCTAAAAA ATTGAAAGAT 
    TCTCCCTGCC TCC

    Gene models with high sequence identity

    1. AT4G05420.2 [+] show detail - damaged DNA binding protein 1A
      E-value: 0.00000007; Score: 54.30

     

    InterPro Scan Digest

    See the detailed result >

    AT4G05420.2

    Model type
    Protein coding
    Short Description
    damaged DNA binding protein 1A
    Curator Summary
    Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.
    Computational Description
    damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR