K08612

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08612

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08612

Determination of introduced cDNA(s)

  • J013031C20 - Rice Full-length cDNAs - Original: J013031C20

    full reading [+] show sequence

    Nucleotide sequence: J013031C20 - full reading 
    GGGTTTCCCT CCCCCCGAGT CGAGGCGAGC TGAGACGAAG CGCGGCGGCG 
    GTGGAGCTGT CTATGAGCGG CGGCGCGCTG CGGACGTTCA CGCGGTGCGT 
    CACCTGCCTC GCGCGCGTCG GCTCCGACCT CGTCCTCCAG GCCCACCCCG 
    CCAAGCTTGA GCTGCACACG CTCAACAGCT CGCGATCGGC GTACGCGTCC 
    ATCTCGCTGG CGCGGGACTT CTTCGACGAG TTCAGCCTCT CCGCCGCCGC 
    CGCCGCCGAC TCGGCGCCGT CGTCGACGCC GCTCCAGTGC AGCGTCCTCC 
    TCAAGTCCGC CTCCCTCCCC AACCCCGACG CGCCCAAGCT CCAGCTCACC 
    CTCCACTGCC TCAACGGGGT GAAGAAGACG TACTGGATCG CGTGCAGCGC 
    GGAGTCCGAG GTGCAGACGC TGGCGCTCGA CCGCAGCAAC TTCTCCAGCC 
    GCCTCGCCAT CCGGCCGCGG GACCTGGCGC GCCTGCTCTC CAATTTCCAG 
    TCCTCGCTGC AGGAGCTCAC GGTTATTGCC ACCGGTCCTG CTGCTGGGCT 
    CTCCAACGTC GGCGTGGATG GTGAGATTGA GGGGAAGGCT GTCGAGCTCA 
    GAAGCTACAT TGACCCGACG AAAGATGACT GCGATACGAG GCTGCACACG 
    CAGCTGTGGA TTGACCCAAC AGAGGAGTTA GTGGAGTATG TACATTCCGG 
    TGATTCAGTG GATGTCACAT TCGGGGTGAA AGAACTCAAG GCTTTCTTAA 
    CATTTTGTGA AGGATGTGAA GTTGATATCC TCCTATTCTT TCAGAAGGCT 
    GGCGAGCCTG TCCTTTTGGT TCCCAAATTT GGGCTTGACG ATGGATCAAG 
    TTCTGATTTT GATGCAACAC TAGTTCTTGC CACTATGCTT GTATCACAAC 
    TTACTGACAG CAGTGTTGCC CAACAGCCAA CTACTTCTGC ACAGCGAGCA 
    GAAGAACCAA GGGTTGCTGC TACACCACCA CCAGTCCCTG AAAATGTCTC 
    AAACCATACT AAAATATGGT CGGAGCTATC AGGTAGTGCT CCCAAAAGTT 
    TTGAAGTTAA CAGAGAAAAA TACACCCAGA AGGAGAGAAA TGCCAATTCT 
    AATGCACTGA ATGACACATC AATGCTGCAT AGTGTAAATG CTCGCTACAA 
    GCCACCAGTC GCTGATAATG CAAACGATAC AATGCAGCCT ATGCAAATGG 
    ATCACTTGGA AGAGCCTCCT GATGTTGTCA GTGATAATCC TCGATCACAG 
    CATCACCCAA GCAATTGGGT AGGTGCTGAT GAAGATGACG ATGATGACGA 
    AGATGAGGAG CTTTTCGTCC AAACAACACC GCACTACATG GACTAGGGAT 
    CGATGCTGAT CCTTATACTT TAGGTACATA TCAGGCTATC AGCCCGATGC 
    AAAGAGAATG GACTAGAAAC TAGTTAAGTA CCTTTCTCTT TGCTCTTAGT 
    TCTTTCAGGC CTGAAGTTAA CACAGAATAT GTTAATCTTT TTAACAATGT 
    GACTTGTTTG TATCCGATGT GGCTATGGCA TTTCTCATAG TGCAGAGATT 
    TTTTTTATGG C

    Gene models with high sequence identity

    1. AT3G05480.1 [+] show detail - cell cycle checkpoint control protein family
      E-value: 1e-94; Score: 344.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Rad9 1.8e-52
    superfamily DNA clamp 1.7e-07
    HMMPIR Cell cycle checkpoint, RAD9 9e-165
    HMMPfam Rad9 5.2e-50

    See the detailed result >

    AT3G05480.1

    Model type
    Protein coding
    Short Description
    cell cycle checkpoint control protein family
    Curator Summary
    Involved in the regulation of DNA damage repair and homologous recombination.
    Computational Description
    RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 299 Blast hits to 299 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 56; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR