K08612

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08612

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08612

Determination of introduced cDNA(s)

  • J013031C20 - Rice Full-length cDNAs - Original: J013031C20

    full reading [+] show sequence

    Nucleotide sequence: J013031C20 - full reading
    GGGTTTCCCT CCCCCCGAGT CGAGGCGAGC TGAGACGAAG CGCGGCGGCG 
    GTGGAGCTGT CTATGAGCGG CGGCGCGCTG CGGACGTTCA CGCGGTGCGT
    CACCTGCCTC GCGCGCGTCG GCTCCGACCT CGTCCTCCAG GCCCACCCCG
    CCAAGCTTGA GCTGCACACG CTCAACAGCT CGCGATCGGC GTACGCGTCC
    ATCTCGCTGG CGCGGGACTT CTTCGACGAG TTCAGCCTCT CCGCCGCCGC
    CGCCGCCGAC TCGGCGCCGT CGTCGACGCC GCTCCAGTGC AGCGTCCTCC
    TCAAGTCCGC CTCCCTCCCC AACCCCGACG CGCCCAAGCT CCAGCTCACC
    CTCCACTGCC TCAACGGGGT GAAGAAGACG TACTGGATCG CGTGCAGCGC
    GGAGTCCGAG GTGCAGACGC TGGCGCTCGA CCGCAGCAAC TTCTCCAGCC
    GCCTCGCCAT CCGGCCGCGG GACCTGGCGC GCCTGCTCTC CAATTTCCAG
    TCCTCGCTGC AGGAGCTCAC GGTTATTGCC ACCGGTCCTG CTGCTGGGCT
    CTCCAACGTC GGCGTGGATG GTGAGATTGA GGGGAAGGCT GTCGAGCTCA
    GAAGCTACAT TGACCCGACG AAAGATGACT GCGATACGAG GCTGCACACG
    CAGCTGTGGA TTGACCCAAC AGAGGAGTTA GTGGAGTATG TACATTCCGG
    TGATTCAGTG GATGTCACAT TCGGGGTGAA AGAACTCAAG GCTTTCTTAA
    CATTTTGTGA AGGATGTGAA GTTGATATCC TCCTATTCTT TCAGAAGGCT
    GGCGAGCCTG TCCTTTTGGT TCCCAAATTT GGGCTTGACG ATGGATCAAG
    TTCTGATTTT GATGCAACAC TAGTTCTTGC CACTATGCTT GTATCACAAC
    TTACTGACAG CAGTGTTGCC CAACAGCCAA CTACTTCTGC ACAGCGAGCA
    GAAGAACCAA GGGTTGCTGC TACACCACCA CCAGTCCCTG AAAATGTCTC
    AAACCATACT AAAATATGGT CGGAGCTATC AGGTAGTGCT CCCAAAAGTT
    TTGAAGTTAA CAGAGAAAAA TACACCCAGA AGGAGAGAAA TGCCAATTCT
    AATGCACTGA ATGACACATC AATGCTGCAT AGTGTAAATG CTCGCTACAA
    GCCACCAGTC GCTGATAATG CAAACGATAC AATGCAGCCT ATGCAAATGG
    ATCACTTGGA AGAGCCTCCT GATGTTGTCA GTGATAATCC TCGATCACAG
    CATCACCCAA GCAATTGGGT AGGTGCTGAT GAAGATGACG ATGATGACGA
    AGATGAGGAG CTTTTCGTCC AAACAACACC GCACTACATG GACTAGGGAT
    CGATGCTGAT CCTTATACTT TAGGTACATA TCAGGCTATC AGCCCGATGC
    AAAGAGAATG GACTAGAAAC TAGTTAAGTA CCTTTCTCTT TGCTCTTAGT
    TCTTTCAGGC CTGAAGTTAA CACAGAATAT GTTAATCTTT TTAACAATGT
    GACTTGTTTG TATCCGATGT GGCTATGGCA TTTCTCATAG TGCAGAGATT
    TTTTTTATGG C

    Gene models with high sequence identity

    1. AT3G05480.1 [+] show detail - cell cycle checkpoint control protein family
      E-value: 1e-94; Score: 344.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Rad9 1.8e-52
    superfamily DNA clamp 0.00000017
    HMMPIR Cell cycle checkpoint, RAD9 9e-165
    HMMPfam Rad9 5.2e-50

    See the detailed result >

    AT3G05480.1

    Model type
    Protein coding
    Short Description
    cell cycle checkpoint control protein family
    Curator Summary
    Involved in the regulation of DNA damage repair and homologous recombination.
    Computational Description
    RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 299 Blast hits to 299 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 56; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR