K08618

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08618

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08618

Determination of introduced cDNA(s)

  • J013000J14 - Rice Full-length cDNAs - Original: J013000J14

    full reading [+] show sequence

    Nucleotide sequence: J013000J14 - full reading 
    GGGAGCCAAG CCCTAGGCTC CTCCTCTCCT CCCAATCCCC AATCCCTGTT 
    CGGCTTCTCC TTCCTCCCCT CCGCGGCCGA TCGCGATGGA ACCCTGAGCT 
    ACGTGGTTGG TGCTTCACCG CTGGAGTAGA GTTCTACTAT AGTAGGGTTT 
    GGGGGCGGCG GTCTCGGAGG AGGGAGGAAG CCTTTGGCCA TGGCGAGCGA 
    CGTGCCCATG AGCCCGGAGC TCGAGCAGAT CGACGGCGAG GTCCAGGACA 
    TCTTCCGCGC CCTCCAAAAT GGATTTCAAA AGATGGACAA GATTAAAGAT 
    TCAAGTAGGC AAGCTAAACA GCTGGAGGAT CTCACAGCAA AAATGAAGGA 
    GTGCAAGCGT TTGATCAAAG AGTTTGATCG TATATTGAAA GATGAGGAGT 
    CAAACAACCC TCCTGAGGTC CACAAGCAGC TAAATGACAG AAAGCAATAT 
    ATGATCAAAG AGTTGAATTC CTATGTCACC TTGAGGAAGA CATATCAAAG 
    TAGCCTAGGT AATAATAATA AGAGGGTTGA GCTCTTTGAT ATGGGCGCTG 
    GAAGTAGTGA ACCTGCTGCC GAGGACAACA TCCAAATAGC ATCAGCTATG 
    ACAAACCAAC AACTGATGGA TGCTGGAAGA GAACAAATGA CTCAGACTGA 
    TCAAGCTATT GACCGTTCAA AAATGGTTGT GGCACAAACT ATTGAAACTG 
    GAACACAAAC TGCTTCAGCG CTATCACAGC AAACAGAACA AATGAAGAGA 
    ATTGGCAATG AGCTGGATAC TGTTCACTTT TCGTTAAAGA AGGCTAGCCA 
    GCTGGTGAAA GAGATTGGCC GTCAGGTTGC AACTGACAAA TGCATTATGG 
    CATTGCTTTT TCTGATTGTT TGTGGTGTGA TTGCAATTAT TGTTGTTAAG 
    ATTGTCAACC CACATAACAA GAACATCCGC GACATCCCAG GACTTGCTCC 
    GCCTGCTCAA AATTTCCAGA TTAGTAACAG GAGACTGCTG TCGGTAGAAA 
    TTATCAGAGG TCTATGATGA CTGTGCTTGC AAGTTCCATG CAGGCGGAGT 
    TCAGTTCGTT TCTTCAGAGT AGCTTAATTG CGGTCATAAG ATACTACGAC 
    ATGCTGTAAA ATTCTTAGTG CCTGTATATT TTATTCCCTG GTGTATTAGA 
    TATGAAGTCA GTAGATTCCC GCGTCTGATG CTTGTATACT CCCCGGCCTT 
    TTGGTTGTGT GCATAAATGC ATTATAGAGA TGAGATCTTT TACCAGTC

    Gene models with high sequence identity

    1. AT3G17440.1 [+] show detail - novel plant snare 13
      E-value: 6e-106; Score: 381.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sec20 2.1e-08
    HMMPanther NOVEL PLANT SNARE 6.4e-151
    HMMPanther VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATE 6.4e-151
    Gene3D no description 7.1e-05
    ProfileScan Target SNARE coiled-coil domain 9.534
    Coil coiled-coil 0

    See the detailed result >

    AT3G17440.1

    Model type
    Protein coding
    Short Description
    novel plant snare 13
    Curator Summary
    member of NPSN Gene Family
    Computational Description
    novel plant snare 13 (NPSN13); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: novel plant snare 12 (TAIR:AT1G48240.1); Has 481 Blast hits to 465 proteins in 133 species: Archae - 4; Bacteria - 38; Metazoa - 112; Fungi - 19; Plants - 145; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR